Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2703 ATGGTGAACGTGGTGGAATTGCAGAAACAGCTGCAGAGGTGGCAGCAGAGTGGCAACAATGTCAATGTCGACGCCAACGGAGAACTCATGTATGTCAAAGTCATGACTGATGAACAGTTGGAAACTCTGAGGAAACAGATTGCTGTTTATGCCACCATTTGTGACCAACTTATTGAGATGCACAGAACACTCTCAGCTCAGCAGGATCTTGCAGGGGCAAGATTGGGAAATCTGTACTGTGATCCATTGATGACATCTGGTGGACACAAAATAACATCAAGACAAAGGTGGACACCTACACCTGTGCAGCTTCAGATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGGAAAAAATCAAAGAGATAACTGCTGAGCTGGGCCAGCATGGTCAAATTTCTGAAACAAATGTGTACAACTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAACTGCAAAATGTGGCTCCAAGCAACACGGAATCAGAAGTGGACACTGAGGTTGATTCTAAGGATAAGAAGACAAAACCTGAGGAGTTTCTGTCTCAACATAACATAACAACTTCTGGAGGATCCGAAAAGCTGTGCTTTCAGAACCCTCAGGTGTACTCTGATTTGCAGTACTTGAATCCTGATTCCAACAAGCCGTATTCCATGTTCCCATCAGATGGCAGTTTGAAATCCACAAGAAATTTGACTCATGTGTCTGTTTTTAACCAGGTGCTGTCGAATTCAAGGAGTGAGTGTGCAGGTGGAAAAATGGAAGTTGGTGGGACAGTGAGCTATAATTTATTCCACCAAACAGGAGATTGCAATCTGGGGTCTGATTTTTAG 846 0.435 MVNVVELQKQLQRWQQSGNNVNVDANGELMYVKVMTDEQLETLRKQIAVYATICDQLIEMHRTLSAQQDLAGARLGNLYCDPLMTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVDTEVDSKDKKTKPEEFLSQHNITTSGGSEKLCFQNPQVYSDLQYLNPDSNKPYSMFPSDGSLKSTRNLTHVSVFNQVLSNSRSECAGGKMEVGGTVSYNLFHQTGDCNLGSDF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2703 281 CDD homeodomain 94 155 IPR001356 GO:0003677
Vra8g2703 281 Pfam Homeodomain 94 154 IPR001356 GO:0003677
Vra8g2703 281 SMART HOX_1 92 159 IPR001356 GO:0003677
Vra8g2703 281 PANTHER WUSCHEL-RELATED HOMEOBOX 13 14 277 IPR044559 GO:0003700
Vra8g2703 281 Gene3D - 96 160 - -
Vra8g2703 281 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Vra8g2703 281 MobiDBLite consensus disorder prediction 153 181 - -
Vra8g2703 281 SUPERFAMILY Homeodomain-like 92 156 IPR009057 -
Vra8g2703 281 PANTHER - 14 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2703 Vra-Chr8 44767061 44769043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2703 30 277 Wox Gene Family AT4G35550 52.256 3.19e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra8g2703 Homeodomain 8.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2703 - - pvu:PHAVU_007G011600g 511.916