Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2693 ATGGCATCTCAGACGCGGAAGAGAGTGGACGCGGTTGATTCTCGCTCTGCTTCCGTTCTTGTTCGCGCAAAAGATGGCAGTGCTTTTTCGCGATGCGACGATTGCAAGAAGAATGTGCCAGTGGCACTCATCGACATGCACAATTGCAGCCTTGAGGCTAAAATCAAAATGAACCTTGATGCGCAGGTTGTGGACCAGGCTGCCGACGCTAAGAAGCAAGAGAGGAAGAAGCCGAAATCTAAAGAGCCAAAGGCAAAAAAGGCTAAGGTAGAGAAGGGAAAGAAGGTCAAGGATCCTAACAAGCCTAAGCGTCCTCCCACGGCCTTCTTTGTCTTTTTGGATGAGTTTAGGAAAACGTTCAAGGAAGCTAATCCGGATTCAAAAGATGTTAAAAGGGTTGGGAAGGAGGCAGGTGAGAAGTGGAGGTCTATGAGTGACGAAGATAAGAAGCCTTATTTGGATAAGGTTGCTGAACTCAAGGCAGAATATGAAAAGGCTATGGAAAGCTATAAAGCCGGTGAAGTTGAAGAAGATGAAGCTGGATCTGATAAGGAAACTGCTGTAAAAGAAGTGGAAGAGGAGTTGACCGATGAAGAGTAG 600 0.465 MASQTRKRVDAVDSRSASVLVRAKDGSAFSRCDDCKKNVPVALIDMHNCSLEAKIKMNLDAQVVDQAADAKKQERKKPKSKEPKAKKAKVEKGKKVKDPNKPKRPPTAFFVFLDEFRKTFKEANPDSKDVKRVGKEAGEKWRSMSDEDKKPYLDKVAELKAEYEKAMESYKAGEVEEDEAGSDKETAVKEVEEELTDEE* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2693 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Vra8g2693 199 MobiDBLite consensus disorder prediction 66 106 - -
Vra8g2693 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 192 - -
Vra8g2693 199 SMART hmgende2 101 172 IPR009071 -
Vra8g2693 199 CDD HMGB-UBF_HMG-box 102 168 - -
Vra8g2693 199 Gene3D High mobility group box domain 97 173 IPR036910 -
Vra8g2693 199 Coils Coil 156 176 - -
Vra8g2693 199 MobiDBLite consensus disorder prediction 170 191 - -
Vra8g2693 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Vra8g2693 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 192 - -
Vra8g2693 199 MobiDBLite consensus disorder prediction 84 102 - -
Vra8g2693 199 Coils Coil 181 199 - -
Vra8g2693 199 MobiDBLite consensus disorder prediction 170 199 - -
Vra8g2693 199 SUPERFAMILY HMG-box 93 175 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2693 Vra-Chr8 44695070 44696746 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vra8g2693 HMG_box 8.9e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2693 K25507 - gmx:100810345 271.937