Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2692 ATGGGTGAGTCTATATATATCAGTTCGTCAGATGATGATGAGTTGGAGGAGATAGATGTTCAACAGAGAACTCTTCCGCAATGGGCAACAACTTTTGAAAGGAGTTCAGACTATGGTAGGCGGAATAATTCTTCAAGAGGGTCAAATAGTTCAAACCTAAGTTCTTCTAGTGTGTATAATAATTCACAAATCAAACCTCATACACTACCTGTGTCCAGTACCAATGCACTGAACCACAGAATTGCACGAAGAGATGAACGTTCCTACCATGCTCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTCCCAAATTTCAAAGTCTCACGGTGAAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGCAACAAGGGCCCTTCCTTCTCCTTTATTTGTGTCAGACATCAGATCAAGCAACTTAAAAGATAACCCAGGCAGTAGTCATCTTCATGATGCATATAAGAATCATCGCCAGGGAGTAGGGCCTAGCATGTCCCGTGACATTCGTGACAGTGTTATCAGGGGCCATGACGAAGGTCATTTATTGAATCAAAATAGTGGGAATAGGATTCTTCCACCATCTTTGGTTCTTGGAAAGGCCATAACTCCACACTTTGCAATTTCTAGTGAATCTGCATATCATTCTGGAATAGGTGATGAAAGGTCTGCTGAAAATGACGAGAGACTTATTTATGAGGCAGCGTTGCAGGATATCAGTCAACCTAAAACAGAATATGAATTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAAAGGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAGGGTCTTGGAAAGACAGTATCAATGATTTCTCTCATTCTGGCATTGAGGTCATTACAAACAAAATCAAAAACAGATGATGTGCACAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAACGGTGGTATAGATGTGGAAAAACATAAAAATAGTGTGGAAGATGATGGTTTGTTTCCTAATAGAGAACCTAGCTGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAATAGGACTAAGGATCATGTAGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTGCCTAAGCAACCATTAGTTGGGGATGATGATATTGAGGACAAAAATGGGGAAAGATTTGGGTTATCCTCTGAGTTTACTGTTAAAAAAAGGAAAAAACCAATTAACGGAAGTAAGAAGGGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTAGGGAATATGGTTCTGGTCCTCTTGCAAAAGTAGGGTGGTTTCGGGTTATTCTAGATGAGGCTCAAACAATAAAAAATCATAGAACTCAGGTGGCTAGAGCTTGTTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCTTGAAGTATGATCCTTATGCTGCATATAAATCATTCTACAACACCATAAAGGTTCCTATAGCCCGAGATACCATTCATGGTTACAAGAAACTTCAAGCAGTTTTAAAGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGATGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAGTGTGGATTTCTCCATTGAGGAACGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCACTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCACCCACGTCTTGTTAAAGATTTTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTAATTAATCTGTTTACTTGTTTGGACGCAACCGTTACTATTTGTCATGTTTGCAATGATCCCCCTCATGAACCTGTTATTACAATGTGCGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATATGTGCCCTGCTGTTAATTGTAAAGAAACAATCGGTGATGACCTTGTTTACTCCAAAGTTACTTTGAAGAGTTGTATCTCTGATGATGGCAGCACTTCCAGTTCTTCAAATTCACATCTTAGTGATTATTCGCTTGTGCAACGGGATGATTACATTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGCAGTCAAATTGTCACATGAAAATATCTAATTCTGACTTACCGAACTCTGGATGTTGTGGAGATTCGCCGTCATCTTCTATTGATCTAGAGTTTGATGACAGTGATTCAGAGGCTAGGGTTGCAAAACACACAAGAAAGTATTCAGAGTCCACAACTGAAGGACCGATAAAGACTATAGTTTTTTCCCAGTGGACTAGTATGTTGGATTTAGTTGAGACATCGTTGTGTCAATTTGGTATACTGTACAGGAGACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGATTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAGATACCGTTGAAGATAGGATACTGTCTCTTCAGGAGGATAAGAGAGAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTAGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 3057 0.4024 MGESIYISSSDDDELEEIDVQQRTLPQWATTFERSSDYGRRNNSSRGSNSSNLSSSSVYNNSQIKPHTLPVSSTNALNHRIARRDERSYHAQNGNTSQQQTVNSQISKSHGEDYEKMSSQQAFKRTLPSTLQPSATRALPSPLFVSDIRSSNLKDNPGSSHLHDAYKNHRQGVGPSMSRDIRDSVIRGHDEGHLLNQNSGNRILPPSLVLGKAITPHFAISSESAYHSGIGDERSAENDERLIYEAALQDISQPKTEYELPAGVLSVSLLRHQKIALAWMLQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQTKSKTDDVHNHKTEALNLDDDDDNGGIDVEKHKNSVEDDGLFPNREPSCSTQAPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGNRTKDHVELAKFDVVLTTYSIVTNEVPKQPLVGDDDIEDKNGERFGLSSEFTVKKRKKPINGSKKGKKGRKGIDSSREYGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAAYKSFYNTIKVPIARDTIHGYKKLQAVLKAIMLRRTKGTLLDGMPIINLPPKTIELSSVDFSIEERAFYTKLESDSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDFDSDPVGKDSVEMAKTLPRELLINLFTCLDATVTICHVCNDPPHEPVITMCGHVFCYECVQEYLSGDDNMCPAVNCKETIGDDLVYSKVTLKSCISDDGSTSSSSNSHLSDYSLVQRDDYISSKIKAVLEVLQSNCHMKISNSDLPNSGCCGDSPSSSIDLEFDDSDSEARVAKHTRKYSESTTEGPIKTIVFSQWTSMLDLVETSLCQFGILYRRLDGRMTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQEDKREMVASAFGEDHAGRSGTRLTVDDLKYLFMV* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2692 1018 Pfam SNF2-related domain 272 674 IPR000330 GO:0005524|GO:0140658
Vra8g2692 1018 Gene3D - 243 330 IPR038718 -
Vra8g2692 1018 Gene3D - 484 611 IPR038718 -
Vra8g2692 1018 MobiDBLite consensus disorder prediction 19 76 - -
Vra8g2692 1018 CDD DEXDc_SHPRH-like 269 596 - -
Vra8g2692 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 596 IPR027417 -
Vra8g2692 1018 ProSitePatterns Zinc finger RING-type signature. 727 736 IPR017907 -
Vra8g2692 1018 CDD SF2_C_SNF 861 969 - -
Vra8g2692 1018 SMART ring_2 712 750 IPR001841 -
Vra8g2692 1018 Pfam Helicase conserved C-terminal domain 863 960 IPR001650 -
Vra8g2692 1018 MobiDBLite consensus disorder prediction 472 491 - -
Vra8g2692 1018 SMART ultradead3 265 566 IPR014001 -
Vra8g2692 1018 Gene3D - 612 1017 IPR027417 -
Vra8g2692 1018 MobiDBLite consensus disorder prediction 91 108 - -
Vra8g2692 1018 ProSiteProfiles Zinc finger RING-type profile. 712 751 IPR001841 -
Vra8g2692 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 1017 IPR027417 -
Vra8g2692 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 847 1013 IPR001650 -
Vra8g2692 1018 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 58 1017 - -
Vra8g2692 1018 SUPERFAMILY RING/U-box 710 769 - -
Vra8g2692 1018 MobiDBLite consensus disorder prediction 90 122 - -
Vra8g2692 1018 MobiDBLite consensus disorder prediction 149 176 - -
Vra8g2692 1018 MobiDBLite consensus disorder prediction 23 76 - -
Vra8g2692 1018 Gene3D - 366 451 IPR038718 -
Vra8g2692 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 763 IPR013083 -
Vra8g2692 1018 Pfam Zinc finger, C3HC4 type (RING finger) 712 748 - -
Vra8g2692 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 558 IPR014001 -
Vra8g2692 1018 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 58 1017 - -
Vra8g2692 1018 MobiDBLite consensus disorder prediction 354 376 - -
Vra8g2692 1018 SMART helicmild6 877 960 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2692 Vra-Chr8 44679672 44690549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2692 1 918 RAD5 or RAD16-like Gene Family AT1G50410 54.069 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra8g2692 SNF2_N 4.1e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2692 - - gmx:100795142 1584.7