Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2681 ATGTCGGAAGCACCACCGTCTCAGACACCGCCTCCAGCCGCTGACGCGCCTCCGCCGCCATACTGGTGCTATCACTGCGAGAAGCGCGTTTCCGTCGAAACGCCCGCCAATCTCCCCGACGTCGTCTGCGGAGAGTGCAAAAACGGCTTCGTCGAAACCATCCCCACGCCGTCGCGCTCGCGCAGCCCCTCCGCTTCCTCCGATGACCCCTACTTTGGCTCGCAGTTTCTCCAGGTGCTTCGCCTCATCGCGCAATCTGCACGTGACGATGATGCGTCGCCCCCGCCGCCGCCGAGTCGTTCTCCGGAGAACGATTTCCTCAGGATCGAGCTGGGAGGCTGGGACAACGACGATGAGAACGAAATCGAGAACGATGACGATAACGGCGACGAGGAGTTTGAGGAGCATGAGGAGGCGGAGGATCGCTCCGGCAACGAGGATCCGCACGGAGATGACGAGGATCTGAGAAGGAGAAGGCGCGAGCTGCTTCGTCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCAGAAATTCTGATGGGCCTGGAGGACAATTCCATTGAGTTCCGCCTCAGGGTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCGGCGGAGTACGAGGCGTTGCTGCAGACGCTGGCGGAGACCGACGGCGGAGGCAGGAGAGGAGCGCCGCCGGCGTCGAAGTCGGCGGTGGAAGCCTTGCCGACGGTGAAAATTGCGTCGGAGAGTGAAACTGTGGTGTGCGCTGTTTGTAAGGATTTGCTGGGTGTTGGAGAGGCCGCGAAGAGGTTACCGTGCGGGCATCAGTATCATGGAGATTGCATTGTTCCTTGGTTGAGCTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTTCCAACGGATGATAGGGAATATGAGGAAGAGAGAGTGGTTAATGCTGCTTCTTCGAATTCGAACGGAGCTTCGAGCTCTGGTGGAGGTGGAAGGACCATTGTTTGA 1029 0.5918 MSEAPPSQTPPPAADAPPPPYWCYHCEKRVSVETPANLPDVVCGECKNGFVETIPTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDENEIENDDDNGDEEFEEHEEAEDRSGNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLRVPESDRYVGNPEDYVDAAEYEALLQTLAETDGGGRRGAPPASKSAVEALPTVKIASESETVVCAVCKDLLGVGEAAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFELPTDDREYEEERVVNAASSNSNGASSSGGGGRTIV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2681 342 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Vra8g2681 342 MobiDBLite consensus disorder prediction 50 73 - -
Vra8g2681 342 MobiDBLite consensus disorder prediction 88 154 - -
Vra8g2681 342 Pfam Ring finger domain 264 305 IPR001841 -
Vra8g2681 342 MobiDBLite consensus disorder prediction 322 342 - -
Vra8g2681 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 311 IPR013083 -
Vra8g2681 342 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 337 - -
Vra8g2681 342 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Vra8g2681 342 MobiDBLite consensus disorder prediction 53 73 - -
Vra8g2681 342 SMART ring_2 264 304 IPR001841 -
Vra8g2681 342 MobiDBLite consensus disorder prediction 116 141 - -
Vra8g2681 342 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 337 - -
Vra8g2681 342 SUPERFAMILY RING/U-box 259 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2681 Vra-Chr8 44621170 44622557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2681 175 317 C3H Transcription Factor Family AT5G01980 48.667 9.80e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2681 - - gmx:100780991 525.398