Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra8g2681 | ATGTCGGAAGCACCACCGTCTCAGACACCGCCTCCAGCCGCTGACGCGCCTCCGCCGCCATACTGGTGCTATCACTGCGAGAAGCGCGTTTCCGTCGAAACGCCCGCCAATCTCCCCGACGTCGTCTGCGGAGAGTGCAAAAACGGCTTCGTCGAAACCATCCCCACGCCGTCGCGCTCGCGCAGCCCCTCCGCTTCCTCCGATGACCCCTACTTTGGCTCGCAGTTTCTCCAGGTGCTTCGCCTCATCGCGCAATCTGCACGTGACGATGATGCGTCGCCCCCGCCGCCGCCGAGTCGTTCTCCGGAGAACGATTTCCTCAGGATCGAGCTGGGAGGCTGGGACAACGACGATGAGAACGAAATCGAGAACGATGACGATAACGGCGACGAGGAGTTTGAGGAGCATGAGGAGGCGGAGGATCGCTCCGGCAACGAGGATCCGCACGGAGATGACGAGGATCTGAGAAGGAGAAGGCGCGAGCTGCTTCGTCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCAGAAATTCTGATGGGCCTGGAGGACAATTCCATTGAGTTCCGCCTCAGGGTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCGGCGGAGTACGAGGCGTTGCTGCAGACGCTGGCGGAGACCGACGGCGGAGGCAGGAGAGGAGCGCCGCCGGCGTCGAAGTCGGCGGTGGAAGCCTTGCCGACGGTGAAAATTGCGTCGGAGAGTGAAACTGTGGTGTGCGCTGTTTGTAAGGATTTGCTGGGTGTTGGAGAGGCCGCGAAGAGGTTACCGTGCGGGCATCAGTATCATGGAGATTGCATTGTTCCTTGGTTGAGCTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTTCCAACGGATGATAGGGAATATGAGGAAGAGAGAGTGGTTAATGCTGCTTCTTCGAATTCGAACGGAGCTTCGAGCTCTGGTGGAGGTGGAAGGACCATTGTTTGA | 1029 | 0.5918 | MSEAPPSQTPPPAADAPPPPYWCYHCEKRVSVETPANLPDVVCGECKNGFVETIPTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDENEIENDDDNGDEEFEEHEEAEDRSGNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLRVPESDRYVGNPEDYVDAAEYEALLQTLAETDGGGRRGAPPASKSAVEALPTVKIASESETVVCAVCKDLLGVGEAAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFELPTDDREYEEERVVNAASSNSNGASSSGGGGRTIV* | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra8g2681 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 264 | 305 | IPR001841 | - | |
Vra8g2681 | 342 | MobiDBLite | consensus disorder prediction | 50 | 73 | - | - | |
Vra8g2681 | 342 | MobiDBLite | consensus disorder prediction | 88 | 154 | - | - | |
Vra8g2681 | 342 | Pfam | Ring finger domain | 264 | 305 | IPR001841 | - | |
Vra8g2681 | 342 | MobiDBLite | consensus disorder prediction | 322 | 342 | - | - | |
Vra8g2681 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 311 | IPR013083 | - | |
Vra8g2681 | 342 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 35 | 337 | - | - | |
Vra8g2681 | 342 | Pfam | zinc-ribbon | 21 | 54 | IPR039525 | GO:0061630 | |
Vra8g2681 | 342 | MobiDBLite | consensus disorder prediction | 53 | 73 | - | - | |
Vra8g2681 | 342 | SMART | ring_2 | 264 | 304 | IPR001841 | - | |
Vra8g2681 | 342 | MobiDBLite | consensus disorder prediction | 116 | 141 | - | - | |
Vra8g2681 | 342 | PANTHER | AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED | 35 | 337 | - | - | |
Vra8g2681 | 342 | SUPERFAMILY | RING/U-box | 259 | 311 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra8g2681 | Vra-Chr8 | 44621170 | 44622557 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra8g2681 | 175 | 317 | C3H Transcription Factor Family | AT5G01980 | 48.667 | 9.80e-36 | 133 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra8g2681 | - | - | gmx:100780991 | 525.398 |