Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2670 ATGATGTCTTCCGGCGGGGACAGTGGTAAGCCATTTTTCTGTCACGTGTGCAATCAGAGGATCACGTGCACCGATGAGTCGGAACCGTTCTGCCCGATCTGTCTGGAAGGTTTCGTGGAGGAATGGAACCCTAATAACCATAGTCATAACCCTAACCCTAATTTCACCCATGAGAGTGGGGGAGAATCTATGGATCCCGAACTCCCGTTCGATTTATTCGACACCATGCTCCCTCTCTTGCTCAACGCGGGTTCCAGGACCCGCCGCGAAGCCGACATGTTTGACCCAAGGACCTACCTCCAGAACTACCTGCAGAACCTTCGCGCCGACGGCGCTAACATTCAATTCTCCTTCGGCTCCGACACGGGGTTCCGCCCCTCGTCAAACCTTGGCGACTACTATCTCGGCCCGGGCTTTGAGCAGTTGATTCAGCTGCTCGCCGACAACGACCCAAACCGTTACGGCACGCCACCGGCCGCAAAGGACGCCGTCGAGAATCTCCCCACAGTCACCGTCGACGACGAGTTGCTGAACTCGGAGATGAACCAATGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCACGCAGGTGACGCAGATGCCGTGCAAGCACGCGTATCATGCTGACTGCCTGATTCCTTGGCTTAGGCTGCATAACTCTTGCCCCGTTTGTCGGTATGAACTGCCCACCGATGATGCGGATTATGAGAATCGGACGCGGAGCAGCGGCGATGATGGTGGGTCGAGGTCTGATGTGAGCGATAGTGGCAGTGGCAGTGGCGGTGGCGCGGGAGGGGGAAATGGTAGACCTGTTCACCGGACTGTTAGAATATATTTGCGGCATCCTTTTGATGCAGGTGACTCTGCGCAGGACAGTTCCGAAAGGGGTTGGGAAAGTTGGGATTGA 906 0.564 MMSSGGDSGKPFFCHVCNQRITCTDESEPFCPICLEGFVEEWNPNNHSHNPNPNFTHESGGESMDPELPFDLFDTMLPLLLNAGSRTRREADMFDPRTYLQNYLQNLRADGANIQFSFGSDTGFRPSSNLGDYYLGPGFEQLIQLLADNDPNRYGTPPAAKDAVENLPTVTVDDELLNSEMNQCAVCQDEFEKGTQVTQMPCKHAYHADCLIPWLRLHNSCPVCRYELPTDDADYENRTRSSGDDGGSRSDVSDSGSGSGGGAGGGNGRPVHRTVRIYLRHPFDAGDSAQDSSERGWESWD* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2670 301 SUPERFAMILY RING/U-box 163 231 - -
Vra8g2670 301 CDD RING-H2_RNF126_like 183 225 - -
Vra8g2670 301 Pfam Ring finger domain 182 225 IPR001841 -
Vra8g2670 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 231 IPR013083 -
Vra8g2670 301 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Vra8g2670 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 286 - -
Vra8g2670 301 SMART ring_2 184 224 IPR001841 -
Vra8g2670 301 MobiDBLite consensus disorder prediction 233 301 - -
Vra8g2670 301 MobiDBLite consensus disorder prediction 233 247 - -
Vra8g2670 301 PANTHER OS06G0101300 PROTEIN 9 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2670 Vra-Chr8 44549502 44551029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2670 97 240 C3H Transcription Factor Family AT5G01980 42.759 2.57e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2670 K11982 - gmx:100785289 409.838