Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra8g2665 | ATGGAGAACGACACCGCCGCCGCCGCTAACAATAACACCGCCACTGCGAAAGTAGGTTCCGGAGGAGTGAAATCGAACAATCATAACCTAGAGGAAGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAGCAAGTGGAGGCGGAAGAGGAAGAAGATCGAGAAGCCGATGTAGGTGAAGGAGAACCAACTGGATCTGCGCCCAACCCTCGCCAACCTACGCGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTTGCTCTTGCTCGAACCCTCCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGTAGTTGGGAAGGTGAAAGCTATTTGCATGATGATGGAGATGATTTTGATGATCTGCATGATGGTACTGACGTGGATGAGGACGAGGATGATGATGACGAGGATGACGATGAAGATGATGATAACGAGGATTATGAAGATGAAGATGCATTTGATGTCCATGCTGGTGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTTTTTTCAAGCGATGAAGCATATGCTAGAGCATTACAGGAAGCTGAAGAGAGGGAGATGGCAGCTAGATTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGCAGAGGACGTAGAGGAACATGGTGCTAATTCTCAGGTAAATGTCTCTGTAGTTGTACGCTCACACGGAACCATGGACACAATACCAAACATTGAAAAGGATGCTTGGGAGGACGTTGACCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACCGATACTATTGCTGGTTTGCCTTCACTGAACTACAAGATTGGGAGTGATCAGCATGGAAGCAATGATTCGTGCGTCATTTGCCGGGTGGACTTTGAGGATGGTGAGTCTTTAACACATCTTTCCTGCAAACATCTGTACCATCCTGAGTGTATCAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTCTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG | 1077 | 0.468 | MENDTAAAANNNTATAKVGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADVGEGEPTGSAPNPRQPTRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGESYLHDDGDDFDDLHDGTDVDEDEDDDDEDDDEDDDNEDYEDEDAFDVHAGAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDVEEHGANSQVNVSVVVRSHGTMDTIPNIEKDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSLNYKIGSDQHGSNDSCVICRVDFEDGESLTHLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra8g2665 | 358 | MobiDBLite | consensus disorder prediction | 68 | 84 | - | - | |
| Vra8g2665 | 358 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Vra8g2665 | 358 | MobiDBLite | consensus disorder prediction | 45 | 59 | - | - | |
| Vra8g2665 | 358 | MobiDBLite | consensus disorder prediction | 108 | 159 | - | - | |
| Vra8g2665 | 358 | ProSiteProfiles | Zinc finger RING-type profile. | 307 | 348 | IPR001841 | - | |
| Vra8g2665 | 358 | MobiDBLite | consensus disorder prediction | 131 | 159 | - | - | |
| Vra8g2665 | 358 | SUPERFAMILY | RING/U-box | 298 | 352 | - | - | |
| Vra8g2665 | 358 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 272 | 354 | IPR013083 | - | |
| Vra8g2665 | 358 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Vra8g2665 | 358 | Pfam | Ring finger domain | 305 | 347 | IPR001841 | - | |
| Vra8g2665 | 358 | SMART | ring_2 | 307 | 347 | IPR001841 | - | |
| Vra8g2665 | 358 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 25 | 356 | - | - | |
| Vra8g2665 | 358 | Coils | Coil | 30 | 50 | - | - | |
| Vra8g2665 | 358 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 25 | 356 | IPR043312 | - | |
| Vra8g2665 | 358 | CDD | RING-H2_PA-TM-RING | 307 | 347 | - | - | |
| Vra8g2665 | 358 | MobiDBLite | consensus disorder prediction | 27 | 44 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra8g2665 | Vra-Chr8 | 44525998 | 44531647 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra8g2665 | 65 | 233 | C3H Transcription Factor Family | AT3G19910 | 44.681 | 1.97e-37 | 133 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra8g2665 | K19045 | - | gmx:100306465 | 459.529 |