Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2660 ATGGCGGGCAAAGGGAAAACGCGACGTGAAAATACAGTCACCATTCCGGTAGATTCAAACCCCACCCAGCAAAATATTCAATCTTTGGATTTTAATGCCGAGTGTGAGGCTGATCAGAAGAAAGCAATCGACTTTACTGAAACAGTCGACGATGGGGCAGTAGGGCATTCTTCTATTGCCGAATGTGTGAAAAGAAAACGTGGCAGAAGAAGTGAAACGGAGGGCAAGACAACGATGTCAGAGGGCAGTTTGTCCGAGAAGAACAGCGCTCAAGACGAAAACCATGGTGAAAATGGTGGGGTTGGAGTTTCTACCTCTGTTCAAGGTGTGAAAAAGAAGCGTGGCAGAAAGAGTAAAGAGGAAAAGGAGATGGAAAGGAAGTTGTTGGAGGAAAATTTGTTGGAGAAAAATGGTGAAAATAGCAGGGTCGGATATTCTTCTTTTCAAGGTGAGAAAAAGGAAACGGAAGACATGGACAGCAAGAGTTCAGAGGGCAATTTGTTCGAGAAGGGTGGTCGAGATGTTAGCCACGGTGAAAGGGATGGGGTAGGTGGTTCTTCTCTTCAAGAAGGCGTGACCGATGGGGGTAATGGCGAGCTTCATGAGAAGAGGCGTGGGAGGAAAAGAAAAGTTGTTAAAGAAGGTGGCGGTGAGTTTGAAATGCCTGACGGTTTTTCGGGAAGTGGAAGTGACATTCGGAAACAACATAATTTTAGAAGCCGTAAAGTCAACAAAATAGAAGCTGTGGTGCCGAAAAAGAAAAAGAGGAATAAGGAGTTTATTGAAAANGAATCCNCAATGTGCCATCAATGCCAGAGAAATGANAAAGGCAGGGTTGTGAGGTGCGCAAAATGCAAANCCAAAAGATTTTGCATACCCTGTATTGAAAATTGGTATCCTCATTTGAAAGAGGATTACATTGCNGAGAAATGTCCCGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGCGATCTGATGTACTTATTAAAAAATTGAAGGGAAAAACCAGCACCAATAAAGTTCAGAAGGTTGAGCTCTCTATGTATTTGCTGCAAGTACTTCTTCCGTATTTAAGATTGTTGGATGAAGAGCAAAGGATTGAGAATGAGACAGAAGCTAAGATACANGGAATCTCAGTCTCAGAGCTTAAAGTAGTACACGCAGATTATTTTAAGGATGAACGTATATATTGTGACAATTGCAAAACTTCAATATTTGATTACCACAGAAGCTGTACAGAATGCTCTTTCGATCTTTGTCTCATCTGTTGCCGTGAACTTCGTAGTGGTCAGCTTCTAGGGGGTGCAGATCCAATTACGTTGGAGTTTCCATTCAGAGGTCGTGATTACTTGCATGGTGAAAATTTAGATAAAACGGTAAACCAAACTGAATCAAATGATGCTGCTGAGCCTCTAATTCGTGAATGGTCAAGAGCTGGATGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGAATGTAACCATGGTTTTCTTGAACTGAGAAGTGTATTAGGTCAACATTTTATTACTGATTTATTGTGTAAAGCAAATGGACTGGCACAAACATTGAAGCATGAGACCCCAGACAAATTCTGTTTGTGTTCAAGGTCTGATAGAAGCGCAAATTATGGTATGAGGAAGGCTGCATCCCGTGCAGATTCTAGTGACAATTATTTGTATTGTCCTAAGGCTGTACAACTACAGGATAAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTTAGCCATGTGATTGATNGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGACTAATACCAAACGTGAACAACATTTAGATGTAAAGGCAATTGATTGCTTAGATTTCTGCGAGGTAGAAATTAACATCCACCANTTCTTTACTGGGTATACGAAAGCTTTTGGGGATTGGCGTGGTTGGCCTCGGATATTGAAGTTAAAAGACTGGCCGCCTTCTAATTTATTTGAGGAACGCTTGCCTAGACATTGTGCTGAGTTCATATCTTCCTTACCATTCAAGGAATATACTGATCCTCTTGGTGGTTGTCTTAACATAGCTGTTAAATTGCCTAAAGAGTGTCTAAAGCCAGACATGGGGCCGAAGACATACATTGCTTATGGATTTCCCGAGGAGCTTGGACGTGGTGACTCAGTGACTAAGCTCCACTGTGATATGTCCGATGCAGTAAATGTGTTGACTCATGTTGCTGAAGTCAAATTGGAACCCGAGCATCTTAGTGCCATTGACATGTTGAAACGAAAGCACTTTGAGCATGACAAGAGGGAGCTGCTTAGTGATCACGATGGAGAAACTAACGTTGACAAAGTAACAACGATTCCGGAGAGTGATTTGTCGTTTGCAGGTGATGGTTCAGAAGGTGCTCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTATCTGAGGAAGCATTTAAGAGAGTTTAGGCATATCCATTGTAGTCCTGTAGAGCAGGTTATTCACCCCATCCATGACCAGACATTCTATTTGACCGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCTGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTAACAGAGGAATTTCGTAAACTTCCCATAAGCCATGGGTCTGCTGAGGATAAATTGGAGCAGGTGAAAAAGATGGCAATATATGCTATGCAAGATGTGGTAACAAAATTGGAAAAAGCAAGGATGTAA 2883 0.4232 MAGKGKTRRENTVTIPVDSNPTQQNIQSLDFNAECEADQKKAIDFTETVDDGAVGHSSIAECVKRKRGRRSETEGKTTMSEGSLSEKNSAQDENHGENGGVGVSTSVQGVKKKRGRKSKEEKEMERKLLEENLLEKNGENSRVGYSSFQGEKKETEDMDSKSSEGNLFEKGGRDVSHGERDGVGGSSLQEGVTDGGNGELHEKRRGRKRKVVKEGGGEFEMPDGFSGSGSDIRKQHNFRSRKVNKIEAVVPKKKKRNKEFIEXESXMCHQCQRNXKGRVVRCAKCKXKRFCIPCIENWYPHLKEDYIAEKCPVCRGNCNCKACLRSDVLIKKLKGKTSTNKVQKVELSMYLLQVLLPYLRLLDEEQRIENETEAKIXGISVSELKVVHADYFKDERIYCDNCKTSIFDYHRSCTECSFDLCLICCRELRSGQLLGGADPITLEFPFRGRDYLHGENLDKTVNQTESNDAAEPLIREWSRAGWHAESNGSIPCPKECNHGFLELRSVLGQHFITDLLCKANGLAQTLKHETPDKFCLCSRSDRSANYGMRKAASRADSSDNYLYCPKAVQLQDKDLGHFQWHWEKGEPVIVSHVIDXTSGLSWEPLVMWRAFRQMTNTKREQHLDVKAIDCLDFCEVEINIHXFFTGYTKAFGDWRGWPRILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLGGCLNIAVKLPKECLKPDMGPKTYIAYGFPEELGRGDSVTKLHCDMSDAVNVLTHVAEVKLEPEHLSAIDMLKRKHFEHDKRELLSDHDGETNVDKVTTIPESDLSFAGDGSEGALWDIFRRQDVPKLQEYLRKHLREFRHIHCSPVEQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRKLPISHGSAEDKLEQVKKMAIYAMQDVVTKLEKARM* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2660 960 MobiDBLite consensus disorder prediction 60 76 - -
Vra8g2660 960 MobiDBLite consensus disorder prediction 55 233 - -
Vra8g2660 960 Pfam JmjC domain, hydroxylase 811 907 IPR003347 -
Vra8g2660 960 Gene3D Cupin 560 932 - -
Vra8g2660 960 SMART cupin_9 676 924 IPR003347 -
Vra8g2660 960 MobiDBLite consensus disorder prediction 12 31 - -
Vra8g2660 960 MobiDBLite consensus disorder prediction 114 137 - -
Vra8g2660 960 ProSiteProfiles Zinc finger RING-type profile. 268 315 IPR001841 -
Vra8g2660 960 MobiDBLite consensus disorder prediction 1 31 - -
Vra8g2660 960 ProSiteProfiles JmjC domain profile. 695 924 IPR003347 -
Vra8g2660 960 Coils Coil 112 139 - -
Vra8g2660 960 SUPERFAMILY Clavaminate synthase-like 575 949 - -
Vra8g2660 960 MobiDBLite consensus disorder prediction 149 180 - -
Vra8g2660 960 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 264 339 IPR018866 -
Vra8g2660 960 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 64 958 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2660 Vra-Chr8 44493353 44500582 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra8g2660 JmjC 2.9e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2660 K15601 - gmx:112997634 952.97