Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2657 ATGCAATCTATCAGGAAGTCATTCAAATCTTATGGTTCCTTCAGCCAAACAAAAAGGTTTTCCGGCGCCGGAAACCCCGATTCTGACCACGAGCAGCTCCCCATTCTCCTCGACCAAGAAACGCACCGCCACAACGCAATGCCAGCCGGCGACTACGTCGTCAAAATCGACGATGCCGCCAATCCTTCCCAGGCCAACAAGATTTGGCGCGACTCAAGCTACGACTCCTGGAGGGGCGAAGGCTCGTCCTCCGCCGCCGGTGACCAGAGTTTTAATTTCCGGCAGACGGAGGACCCGCCGTCGCAGCTGATAGGGCGGTTCCTCCACAAGCAACGGGCCTCCGGTGAGATGCAGCTGGACATGGATTTGGAAATGGAGGAGCTCCAGGACGATGCCGGCGAAGGAAGGTTGACGCCGGTGGAGGAGTCTCCGGTGAACCATCGCAATTCCAGGGAGCTGAAGGTCTCCTTCGATGAACGCCTTTCCGATTCGAATCTCCTCGAACAGCAGAACGACCCCTTCAGAAGAAGGCACAATAGAGAATCGCCGACGGTTGAGGAGTCTCCGGTGAACTTTCGCAATTCCAGGGAGCTGAAGGTCTCCTTCGATGAACCCCTTCCCAATTCGAATCTCCTCGAACAGCAGAACGACACCTTCAGAAGAAGGCACAGCAAGGAATCGTCGACGATGGCGGACTTCCAACGCCCTCCGCAACCGCCGCAGTACGACCATCGTCGCTCGCCTTCGCCGTCGCCTGTTGACGATGGCGAGGTCCTTCGGTGCACCTCGAACGCTTCCTTCGAGAGAAACCTCTCCATGCAGAGAAAATCTGCGTTGTTGAAGGCCAAAACGAGATCCAGGTTGCTGGCCCCGCCAGACGAATCCGAGAGAAAATCGAGTCGGATTATGAAATCGGGTCAGCTCCAGTCCGGGTTTTTAGGGAGGAAGGGTGATGAGGAGGAGGACGATCCGTTTTTGGAAGAGGATCTTCCTGATGAGTTTAAGAAGACTCATTTCAGCTTCTGGATTCTTCTGGAGTGGGTGAGTTTGATTTTGATCATTGGGTTTTTGATAACCACCCTTTGCATTCCCTTTCTGAGGGAGATGAATCTGTGGCATCTTAAATTATGGAAATGGGAGGTTATGGTTCTGGTTTTGATATGTGGGAGATTGGTGTCTGATTGGGTCATTAGGATTGCTGTGTACTGCATTGAGAGGAACTTCCTCTTGAGGAAGAGGGTATTGTATTTTGTGTACGGTGTGAAGAAAGCAGTTCAGAATTGTGTTTGGTTGGGGCTCGTGTTGATTGCATGGCATTTGTTGTTTGACCAGAGGGTGCAGAGGGAGACCCACAGTAATTTCCTTGAGTATGTTAACAAGGTTTTGGTGTGCTTCCTTGTGGGGACTTTGGTGTGGTTGCTCAAGACTCTCATGGTTAAGGTGTTGGCCTCTTCTTTCCATGTGAGTACCTACTTTGATAGGATTCAGGAGTCACTGTTTAATCAGTATGTGATTGAGACGCTTTCGGGGCCTCCATTGGTGGAGATTCAGAAGGCTGAAGAGGAGGAGGAGAGGCTTGCTGATGAGGTCCAGCAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAAGGCAACTGCTTTTTCTGATATCAAGAGTGGCAGGTCCAGGAGTGGAGTGCTCAAGAGCCCCAGAGCTAAGAGCGCCAAGTTTTCGCGCCCTCTTTCCAAGGGCTCTGACGATGGTGATGTTATCACCATTGATAACCTCAACAAGCTCAACCCCAACAATATCTCTGCCTGGAATATGAAAAGGCTGATGAACATGGTCCGGCATGGGGCTCTTAGCACCTTGGATGAACAGATACTTGATAGCGCCAATGAAGATGAGAACGCCACGCAGATCAGAAGTGAAAACGAGGCAAAAGTTGCTGCTAAGAAAATATTTCAAAATGTTGCTAGGCGTGGGTGCAGGTATATATACCCGGATGACTTGATGCGATTTATGCAAGAAGACGAAGCTGCAAAAACCATGAATCTCTTCGAAGGAGCATCTGATTCTGGGAGAATAAGCAAAGCTGCTTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCGCTCGCATTGACACTAAATGACACAAAAACGGCAGTGAACAAACTTCATCGAATGCTCAATTTTATAGTTGGAATTGTTGTACTGATTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTGTCTTTTTGAGTTCACAGATTGTCTTGGTTACATTTATATTTGGAAACACCTGCAAGACCATATTTGAGGCAATTATTTTCCTATTTGTCATGCACCCATTTGACGTGGGAGATAGATGTGAAATTGATGGGATTCAGATGATCGTAGAAGAAATGAACATATTGACAACTATATTTCTGAAATACGATAATCATAAGGTGATCATCCCTAACAGTGTCCTTGCTACCAAGGCTATATTTAACTATTACCGGAGTCCTGACATGCAAGATATTATCGAATTCTACATACATGTATGCACCCCAGTTGAAAAGATTTCACTTATAAAACACAGAATAACCAGTTTCTGTGAAAGCAAGAAGGAGCACTGGTATCCTTCACCTACTGTAGTAGTCAGGGATCATATAGACATACACATGGTGAAAATGGCTATCTGGCCCAGTCATAGAATGAACTTCCAAGATCAGACAGAAAGGCATATGAGGAGATCCATGTTGCTTGAAGAGTTGATTAAGATTTTCAGGGAACTCGACCTTAATTACCGCCTCTTGCCGCTGGACGTTAACGTCAGAGCCGTGCCTACCTCCTCTGAACGGCTTCCACCTAGTTGGCAATCGATTCCAAGCTGA 2883 0.479 MQSIRKSFKSYGSFSQTKRFSGAGNPDSDHEQLPILLDQETHRHNAMPAGDYVVKIDDAANPSQANKIWRDSSYDSWRGEGSSSAAGDQSFNFRQTEDPPSQLIGRFLHKQRASGEMQLDMDLEMEELQDDAGEGRLTPVEESPVNHRNSRELKVSFDERLSDSNLLEQQNDPFRRRHNRESPTVEESPVNFRNSRELKVSFDEPLPNSNLLEQQNDTFRRRHSKESSTMADFQRPPQPPQYDHRRSPSPSPVDDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLLAPPDESERKSSRIMKSGQLQSGFLGRKGDEEEDDPFLEEDLPDEFKKTHFSFWILLEWVSLILIIGFLITTLCIPFLREMNLWHLKLWKWEVMVLVLICGRLVSDWVIRIAVYCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDQRVQRETHSNFLEYVNKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIQKAEEEEERLADEVQQLQNAGVTIPPDLKATAFSDIKSGRSRSGVLKSPRAKSAKFSRPLSKGSDDGDVITIDNLNKLNPNNISAWNMKRLMNMVRHGALSTLDEQILDSANEDENATQIRSENEAKVAAKKIFQNVARRGCRYIYPDDLMRFMQEDEAAKTMNLFEGASDSGRISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVGIVVLIIWLLILELATTKFLVFLSSQIVLVTFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGIQMIVEEMNILTTIFLKYDNHKVIIPNSVLATKAIFNYYRSPDMQDIIEFYIHVCTPVEKISLIKHRITSFCESKKEHWYPSPTVVVRDHIDIHMVKMAIWPSHRMNFQDQTERHMRRSMLLEELIKIFRELDLNYRLLPLDVNVRAVPTSSERLPPSWQSIPS* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2657 960 Pfam Mechanosensitive ion channel 727 883 IPR006685 GO:0016020|GO:0055085
Vra8g2657 960 Coils Coil 513 539 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 65 99 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 130 258 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 64 102 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 556 579 - -
Vra8g2657 960 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 957 IPR016688 -
Vra8g2657 960 SUPERFAMILY Sm-like ribonucleoproteins 775 834 IPR010920 -
Vra8g2657 960 PIRSF Memb_At2g17000 37 960 IPR016688 -
Vra8g2657 960 Gene3D - 785 834 IPR023408 -
Vra8g2657 960 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 957 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 170 184 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 145 161 - -
Vra8g2657 960 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2657 Vra-Chr8 44454272 44458720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2657 51 955 Mechanosensitive Ion Channel Family AT1G53470 50.692 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2657 K22048 - gmx:102665658 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2657 8 44454272 44458720 Vra8g2657 8 44454272 44458720 ECH