Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2634 ATGAACATCATCATGCAAAACTTGGTGGAAAGACTAAGATCCCTTGTGGGTTTGAACGGATGGGATTACTGTATCTACTGGAAATTGAGTGAAGACGAAAGGTTTCTCGAGTGGTTGGGTTGCTGTTGTGGTGGCACTGAAAGCAACAAAAATGCTGGTGAAGAACATCTTTTCCCTGTGTCTTCATGCAGGGATACCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCCATAGATAATTCTGGGATTCATACACAGACCCTGTTAACAAACCAACCCAGTTGGGTGAACTATTCCAATAGCTTGGATTCAAGCCTTTTGGATGAAACAATGGGGACCCAGGTTTTGATTTCAGCGCCAGGTGGACTAATTGAGCTGTTTGTAACCAAACAAGTGGCTGAAGATCATCAAGTAATAGATTTTGTTACAAGCCAGTGCATTGAAGCTGTGAACCACTCAATGAGCTTCAACATTGACGTGAATTCAATGAGCAACATGCAACAAAACCCACTTTTAGGCGATGAAAACGAAGGGAACAATAGCAGGAACACTCATTTCCACCCTTCGGAACATGTCATGAGCATGGACCACCGCATCGGCCTGTGCAGTTCTCCACTGAACTTCATGCAGCAGTTTAACTACAACCAGCTGAACAGAATGAAGAGCGATACCTTTTCTGAAGAATACCGAGGTTCCTTCCTTCATGAGAAGCAAACTAACCCAGAACACGAGCATGAGAACACGTATCAGAAAAGCCTCATGACAACAGATTCACAGTACATGGAGTCTCTGGAAGCAAAAGAGAAGCAAGAGGAGGAGAAGGAGCTGCTGAAACATGTTGTTGCTCGATCGGATTCAATGTCAGATTGCAGTGAGCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAATCAGTCCAAGAACCTGATGGCCGAGAGGAAGAGAAGGAAGAAGCTGAATGACAGGTTATACAAGCTTCGTTCTTTGGTTCCACGGATCTCTAAGTTGGACAGGGCCTCAATCCTTGGAGATGCTATTGAATACGTAAAGGATTTGCAGAAGCAAGTGAAGGAGCTGCAAGATGAGCTTGAGGAGAATGCAGACACCGAAAGCAACTGCATCAATGGAAATAATGATAACAATAATAATCAATATGTGGCTGTAGGTGAACCGTGTCCAAACTCTGAACCTGCTAAGGGCCAATCTGGGTTGCATGTGGGTACCTCAGGGAATGGCTATCTATACAAACAAAAGGAGGATGCAGCATTCATTGAGAAGCAAACCCAGCAAATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTATTCTGTGAACACAGGCCTGGTGGGTTTGTGAAATTGATGGAGTCGTTGAACACTATTGGCATGGATGTGGTGCATGCCACGGTAACCAGCCACAAGGGCTTGGTGTCAAATGTTTTTGAAGTTGAGAAAAAAGACAATGAAACTGTCGAAGCCGAAGATGTAAGAGAGTCGCTGCTGGAGCTGACGAGGAACCGTTACAGAGGATGGAGTCATGAGGTGACACCAACGTCGGAGAATGCTGTCGGAAGGGATCAACACCAGATATCATCTTTTTCCCACCATTTTCATGCTTAA 1689 0.4494 MNIIMQNLVERLRSLVGLNGWDYCIYWKLSEDERFLEWLGCCCGGTESNKNAGEEHLFPVSSCRDTTYPHPRTKPCDLLSQLSTSIPIDNSGIHTQTLLTNQPSWVNYSNSLDSSLLDETMGTQVLISAPGGLIELFVTKQVAEDHQVIDFVTSQCIEAVNHSMSFNIDVNSMSNMQQNPLLGDENEGNNSRNTHFHPSEHVMSMDHRIGLCSSPLNFMQQFNYNQLNRMKSDTFSEEYRGSFLHEKQTNPEHEHENTYQKSLMTTDSQYMESLEAKEKQEEEKELLKHVVARSDSMSDCSEQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYKLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCINGNNDNNNNQYVAVGEPCPNSEPAKGQSGLHVGTSGNGYLYKQKEDAAFIEKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMESLNTIGMDVVHATVTSHKGLVSNVFEVEKKDNETVEAEDVRESLLELTRNRYRGWSHEVTPTSENAVGRDQHQISSFSHHFHA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2634 562 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 92 536 - -
Vra8g2634 562 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Vra8g2634 562 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 92 536 - -
Vra8g2634 562 MobiDBLite consensus disorder prediction 291 330 - -
Vra8g2634 562 CDD bHLH_AtAMS_like 322 387 - -
Vra8g2634 562 ProSiteProfiles ACT domain profile. 462 534 IPR002912 -
Vra8g2634 562 Coils Coil 358 388 - -
Vra8g2634 562 Pfam Helix-loop-helix DNA-binding domain 324 369 IPR011598 GO:0046983
Vra8g2634 562 Gene3D - 307 384 IPR036638 GO:0046983
Vra8g2634 562 MobiDBLite consensus disorder prediction 244 263 - -
Vra8g2634 562 SMART finulus 325 374 IPR011598 GO:0046983
Vra8g2634 562 MobiDBLite consensus disorder prediction 244 260 - -
Vra8g2634 562 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 381 IPR036638 GO:0046983
Vra8g2634 562 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 154 IPR025610 -
Vra8g2634 562 CDD ACT_UUR-ACR-like 463 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2634 Vra-Chr8 44226951 44229988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2634 5 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 44.840 1.50e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g2634 bHLH-MYC_N 3.7e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2634 - - gmx:100798282 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2634 8 44226951 44229988 Vra8g2634 8 44226951 44229988 ECH