Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2630 ATGGAGAGAGCTGAGTCTTTCCGCTCCGAGAATCCTTTCTTCATTCGTAAAATGCAACCATCATATATTGAAAGTCGTATAATGGTGCCGATTAGTTTCATAACAGAAGATGAAGAAGATGAGCATGACCGTGTTACTCTTTGGACATCTGAAAGCAGACCTTGGCTTGTTGATTTTTATAGGAATAATAGCAGTTGGCAAATAAATCTTACTACTGGATGGAAAAATTTTGTAGAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAGAGTTATAATTTTTAGAGACAGAGAAGAATCAAGTTCTCCTAGGTTTTCAGATCATTCAATTCCTGAATGCAAAGAAAGGGAGTTAGAGAATCACTTCAGTGTCTGCCTCAAACCTAAGGATTTATATTATGTGCTGAATCTTCCAAGGAATTTCTTAAAAAATCATGGTATTGGTGATTCAAATGTGATCCTGGAAGTTGGGAAGAAATCATGGGATGTGAAGCTAGACTCTTACAGTAGATTCACCACTGGTTGGGCTCAATTTATTAGAGACTGTCAATTGAAGCCTGGAGATGTTTGTCGATTCGAGTTGATGGATAAGAAGAAGATTGTTTTTGAAGTTACCTTTGTAACATGCATCAAGTGA 672 0.3676 MERAESFRSENPFFIRKMQPSYIESRIMVPISFITEDEEDEHDRVTLWTSESRPWLVDFYRNNSSWQINLTTGWKNFVEDNNLRLGDVCVFEKIKKSGISFRVIIFRDREESSSPRFSDHSIPECKERELENHFSVCLKPKDLYYVLNLPRNFLKNHGIGDSNVILEVGKKSWDVKLDSYSRFTTGWAQFIRDCQLKPGDVCRFELMDKKKIVFEVTFVTCIK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2630 223 CDD B3_DNA 133 218 IPR003340 GO:0003677
Vra8g2630 223 PANTHER B3 DOMAIN-CONTAINING 2 108 - -
Vra8g2630 223 PANTHER B3 DOMAIN-CONTAINING 127 219 - -
Vra8g2630 223 CDD B3_DNA 12 107 IPR003340 GO:0003677
Vra8g2630 223 Pfam B3 DNA binding domain 147 211 IPR003340 GO:0003677
Vra8g2630 223 Pfam B3 DNA binding domain 13 107 IPR003340 GO:0003677
Vra8g2630 223 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 108 - -
Vra8g2630 223 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 127 219 - -
Vra8g2630 223 SUPERFAMILY DNA-binding pseudobarrel domain 7 107 IPR015300 -
Vra8g2630 223 Gene3D - 122 222 IPR015300 -
Vra8g2630 223 Gene3D - 1 111 IPR015300 -
Vra8g2630 223 ProSiteProfiles B3 DNA-binding domain profile. 147 220 IPR003340 GO:0003677
Vra8g2630 223 SUPERFAMILY DNA-binding pseudobarrel domain 133 216 IPR015300 -
Vra8g2630 223 ProSiteProfiles B3 DNA-binding domain profile. 12 109 IPR003340 GO:0003677
Vra8g2630 223 SMART B3_2 134 220 IPR003340 GO:0003677
Vra8g2630 223 SMART B3_2 14 109 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2630 Vra-Chr8 44196183 44197151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2630 1 216 REM Transcription Factor Family AT4G31690 27.711 9.48e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra8g2630 B3 8.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2630 - - vra:106770722 465.692