Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2629 ATGTCTTCTGGTGATGATAGTGCCATTCACTTCTTCAAGAAAATTGATGAAGACACACTTCGAAACGGGGATCTGAGAATACCTCGGAGTTTTGTGAGTAAATACTGGCAAGATATATCAAATCCACTGAATCTTCTTCTTCCCAAAGGTGCTGAATGGGAAGTGAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTAATTGATAAATGGAAGAAATTTTCAGAATTTTATTCTCTGGATGAAAATTATATCTTGATGTTCAAATATGTGGGTATGTCTCTGTTTGAAGTAGTGATACTTCGTCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCGACTTTAGATAATGCAGAGAATGGTAATGGTCATTCTCCATTACACTTCAAGAAGACAAAATCTTCTTTACCACGTTGTCGTTTTCTCAAGAAGGTGAAAACCAACTGTAGAAACCCACCTAATATCTCTGAAGATGTTGCAAATAGAAGTGGTCCATCTCGTAGTATCAAGGAGGAGTTAATTGAACAACATGCAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGGTACAAAAAGAAAACCATCTGAGTGTAGTTTTTCAACTAGAAGTGACACTGCTATGGAGAGAGCTGAATCTTTCCGCTCTGAGAATCCCTTCTTCATTCGTAAAATGCAACGATCATATATTCAAAGAGATATGATGGTGTTGCCTAATAGTTTCATAACAGAAGATGAAGAAGATGAGCATGACGGTGTTACTCTTTGGACATCTGAAAGCAGACCTTGGCATGTTGAATTTTATCGGAATAATACTAGTAACCAAATAAATTTTACTATTGGATGGAAGGATTTTGTAAAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGAGACAGAGAAGAATCAAGTTCTCCTAGGTTTTCAGATCATTCAATCCCTGAATGCAAAGAAAGGAAGTTAGAGAATCACTTCAGTGTCTGCATCAAACCTAAGGATTTCAATTCTGTGAATCTTCCAAGGAATTTCTTAAAAAATCATGGTATTTGTGATTCAAATGCAGTGATCCTGGAAGTTGGGAAGAAATCATGGAATGTGAAGCTAGACTCTCACTTTAGATTCACTACTGGTTGGGGTCAATTTATTAGAATGTGTCATGTGAAGCCTGGAGATGTTTGTCGATTCGAGTTGATTGATAAAAAGAATACGAAGATTGTGTTTCAAGTTACCATTGTAATATGTATCAAGTGA 1305 0.3579 MSSGDDSAIHFFKKIDEDTLRNGDLRIPRSFVSKYWQDISNPLNLLLPKGAEWEVKWRKVGADIWLIDKWKKFSEFYSLDENYILMFKYVGMSLFEVVILRQTGLEIMYPLKEATLDNAENGNGHSPLHFKKTKSSLPRCRFLKKVKTNCRNPPNISEDVANRSGPSRSIKEELIEQHANGFHSTKFQKRGTKRKPSECSFSTRSDTAMERAESFRSENPFFIRKMQRSYIQRDMMVLPNSFITEDEEDEHDGVTLWTSESRPWHVEFYRNNTSNQINFTIGWKDFVKDNNLRLGDVCVFEKIKKSGISFKVIIFRDREESSSPRFSDHSIPECKERKLENHFSVCIKPKDFNSVNLPRNFLKNHGICDSNAVILEVGKKSWNVKLDSHFRFTTGWGQFIRMCHVKPGDVCRFELIDKKNTKIVFQVTIVICIK* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2629 434 PANTHER B3 DOMAIN-CONTAINING 335 430 - -
Vra8g2629 434 PANTHER B3 DOMAIN-CONTAINING 6 317 - -
Vra8g2629 434 ProSiteProfiles B3 DNA-binding domain profile. 221 318 IPR003340 GO:0003677
Vra8g2629 434 SUPERFAMILY DNA-binding pseudobarrel domain 342 422 IPR015300 -
Vra8g2629 434 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 335 430 - -
Vra8g2629 434 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 317 - -
Vra8g2629 434 Pfam B3 DNA binding domain 12 101 IPR003340 GO:0003677
Vra8g2629 434 Pfam B3 DNA binding domain 221 316 IPR003340 GO:0003677
Vra8g2629 434 Pfam B3 DNA binding domain 355 426 IPR003340 GO:0003677
Vra8g2629 434 CDD B3_DNA 220 316 IPR003340 GO:0003677
Vra8g2629 434 Gene3D - 201 320 IPR015300 -
Vra8g2629 434 Gene3D - 331 432 IPR015300 -
Vra8g2629 434 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Vra8g2629 434 MobiDBLite consensus disorder prediction 185 205 - -
Vra8g2629 434 CDD B3_DNA 357 429 IPR003340 GO:0003677
Vra8g2629 434 SUPERFAMILY DNA-binding pseudobarrel domain 215 316 IPR015300 -
Vra8g2629 434 CDD B3_DNA 10 101 IPR003340 GO:0003677
Vra8g2629 434 Gene3D - 2 104 IPR015300 -
Vra8g2629 434 SMART B3_2 343 429 IPR003340 GO:0003677
Vra8g2629 434 SMART B3_2 222 318 IPR003340 GO:0003677
Vra8g2629 434 SMART B3_2 11 103 IPR003340 GO:0003677
Vra8g2629 434 SUPERFAMILY DNA-binding pseudobarrel domain 7 110 IPR015300 -
Vra8g2629 434 ProSiteProfiles B3 DNA-binding domain profile. 340 431 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2629 Vra-Chr8 44195068 44206013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2629 11 316 B3 DNA Binding Superfamily AT3G18990 28.571 4.43e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra8g2629 B3 8.4e-17 CL0405