Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2628 ATGAATAATAAGGCTAATGGAGTAAGAGAAAGGATTCAATCAAAAAAAGAGAAGAGGAGAACGAATTCAGAAAGAGAGCCAGCAATCTTCAAGAGCTCCAAGAGCCAAACAACACCATCTTCACCGGCGCTTACATATATTCCAACTACACGCATGGCTTCTGAGTATACCCAGAGGAATGCTACCCTGCCAATCTCTTTCTACAAAGTTATTCTTAAAACCAATCTTCAAAGGCTTAAAATACCAAACATGTTCAGTGTCAAACATGGAGGTGATTTGCCTAATCCTTTGTTCATGAAGCTTCCAAATGGAACTGAATGGAAAGTGATCTGGGAAAAAGACAACGGTGAGATTTGGCTGAAAGAGGGATGGAAGGAATTTGTGGAACATTATTCCTTAGACCATGGACACTTTGTTTTCTTTAAATACGAAGGGATATCCCAGATTCATGTAAACATATGTGACCAAAGTGGACTGGAAATAGACTATCCCTGTCTCACTGGTGATGGAAATTACAACCTTGATCATAACGAGGAGGAACCTATCCTAATTTTGGATGAAGAAGAGAGCCCTGAAGATATAGAAGGTGAGAAGTCTGTTCAGAAAACTTCATCTTTGAACCAGCCAAAACAAACTAGAGCAAGAAAAATAGCATGTAATTTCATTTCATGCAATCCCTTTTTCACTGTTGTCATCAAAGCTTGTAATGCGATGGACTATCGGCTGTGGATACCAGATTTGGAAGGCATTATTAGAAAGAAGAAGAAGTGTGCGTTGCTGCAGCGTGGGCAAAGATCGTGGAAAGTAAAGTTGTTATATAAAAAAAGTTGTTTTTCTCGTCATTGTTTCGGTGCTGGCATTCACTTGTTTTTGACTGAAAATGAATTGAAACCAGGAGATGTATGTGTATTCGAATTGATTAGCAAGAAGGATTGTATTTTTAAAGCTCATGTTTTCTAA 960 0.3833 MNNKANGVRERIQSKKEKRRTNSEREPAIFKSSKSQTTPSSPALTYIPTTRMASEYTQRNATLPISFYKVILKTNLQRLKIPNMFSVKHGGDLPNPLFMKLPNGTEWKVIWEKDNGEIWLKEGWKEFVEHYSLDHGHFVFFKYEGISQIHVNICDQSGLEIDYPCLTGDGNYNLDHNEEEPILILDEEESPEDIEGEKSVQKTSSLNQPKQTRARKIACNFISCNPFFTVVIKACNAMDYRLWIPDLEGIIRKKKKCALLQRGQRSWKVKLLYKKSCFSRHCFGAGIHLFLTENELKPGDVCVFELISKKDCIFKAHVF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2628 319 MobiDBLite consensus disorder prediction 28 44 - -
Vra8g2628 319 SUPERFAMILY DNA-binding pseudobarrel domain 66 164 IPR015300 -
Vra8g2628 319 SMART B3_2 67 157 IPR003340 GO:0003677
Vra8g2628 319 SMART B3_2 227 317 IPR003340 GO:0003677
Vra8g2628 319 ProSiteProfiles B3 DNA-binding domain profile. 64 157 IPR003340 GO:0003677
Vra8g2628 319 CDD B3_DNA 66 155 IPR003340 GO:0003677
Vra8g2628 319 Gene3D - 206 319 IPR015300 -
Vra8g2628 319 SUPERFAMILY DNA-binding pseudobarrel domain 224 319 IPR015300 -
Vra8g2628 319 Gene3D - 62 158 IPR015300 -
Vra8g2628 319 PANTHER B3 DOMAIN-CONTAINING 63 319 - -
Vra8g2628 319 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 63 319 - -
Vra8g2628 319 MobiDBLite consensus disorder prediction 9 27 - -
Vra8g2628 319 CDD B3_DNA 226 319 IPR003340 GO:0003677
Vra8g2628 319 Pfam B3 DNA binding domain 249 311 IPR003340 GO:0003677
Vra8g2628 319 Pfam B3 DNA binding domain 75 156 IPR003340 GO:0003677
Vra8g2628 319 ProSiteProfiles B3 DNA-binding domain profile. 227 319 IPR003340 GO:0003677
Vra8g2628 319 MobiDBLite consensus disorder prediction 1 44 - -
Vra8g2628 319 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2628 Vra-Chr8 44181087 44189588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2628 197 319 B3 DNA Binding Superfamily AT3G18990 31.250 6.77e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra8g2628 B3 1.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2628 - - vun:114191441 296.975