Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2626 ATGGGTAGTTGTGGAAGAGAAGGAGCTGTAAGGCAATATATAAGGTCAAAGGTTCCTCGTTTAAGGTGGACTCCCGAGCTGCACCGTTGCTTTGTTCACGCCATTGATAGCCTTGGAGGTCATCAAAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGTCATCTTCAGATGTACAGAAGCATGAGGGGCGACTTGGGGAGACAAGGTAGGACACAGTCCCAACATAGGAACCAATCTTTTGAGGAGCACGATGATGGGTGTGTTGATGAAGTGAATGATGTTTGCGTTGAGTACTCATGTTCGAAAGCCATGGGAATAGAATCTGATTCCTTCTTCGGCCACAGCAATCTCCCTCCGAAAAGAGCAAGAATCGAGACGAGGAGTTCCATCTCAGAGAGTCTGCAATGCAGCCAAAGATTATGTGATGCAGTTCCAAATCCGTACTGTTTTTATGATTATCTGCAGAAGCCCATGGCTGAGCACAAGGGAATAAAGGAGTTCTGTAAGGCTTCAACATGGCAGACACAACCCCATTCCTCTCTGTTACTACCACATTTTCCCACCCTCACTTCATTCCAATCTCCTAACAACCAACAATCAGATTTCCTCCAGGTGACAACATTAAATGAAGGAAAGAGCAGTGGAAAAGGAGTTAATGTAGATGTGAACACTGAGACAGGTGAGGCAGAAGTTGAGGATGTAGGAGGGTATGAATTGTCATTGTCTCTTACATTGCCAAATCCTTCACCTCAGAGAAGTAATTGTTCATGTTCAGGCAGTGAGATCAGTGAGACAATCTCATCATGCCCTGCTGCAGGTTTTAGCAACTACAAGGACTGCTCTACTTCATCCAATCTAAATGAAACAATTAATTTAGACCTTTCTTTAGCCCTATCTGGCAATTGA 942 0.4416 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRTQSQHRNQSFEEHDDGCVDEVNDVCVEYSCSKAMGIESDSFFGHSNLPPKRARIETRSSISESLQCSQRLCDAVPNPYCFYDYLQKPMAEHKGIKEFCKASTWQTQPHSSLLLPHFPTLTSFQSPNNQQSDFLQVTTLNEGKSSGKGVNVDVNTETGEAEVEDVGGYELSLSLTLPNPSPQRSNCSCSGSEISETISSCPAAGFSNYKDCSTSSNLNETINLDLSLALSGN* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2626 313 Gene3D - 18 74 - -
Vra8g2626 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 313 IPR044848 GO:0003700
Vra8g2626 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Vra8g2626 313 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Vra8g2626 313 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Vra8g2626 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vra8g2626 313 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2626 Vra-Chr8 44159561 44163420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2626 1 74 G2-like Transcription Factor Family AT1G14600 74.684 5.30e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g2626 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2626 - - gmx:100787188 431.409