Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2617 ATGGCCGCATCATCTTCCTCAGCATCACTCTTTGGCTTTAGAGAAGAGGATCAAAACCAGATGAAGCAACAGCATTCCTTGACACCATCTTCGTCAGCAACACCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACTCCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACATAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAATATGCCGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGATTGTGGTACACTCTTCTCCAGGAGGGACAGTTTCATCACCCACAGGGCGTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACAGCCACCAAACCTTGGCGCCGCCATCGGCACCCACCTCTTCGGAACCACCGCCAACACCATCCCTCTAAACCTTTCTCAGGTTACATCTCACATTTCCAACATCCAAGACCCCAACACCCAGCCAACAGAACTCCTCCGCCTCGGTGGCGCCGCCGCAAGAGCCTCCCAATTCGACCATCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAACCACCCTTCTTCATGGAACCTAACCAAAACTACCACCCCGACCAACAACAACAACAAGGGCTGCTCCAAAACAAACCCTTCCAACAAGGACTGATGCAGATCCCTGATCATCTCAGCAACAATAACTCACCCTTCAACCTTCCTTTCCTTTCAAACGCCACCAACAATGCTTCATTCACTGAAAACTTCAACAATACCAACAACACCAGCAACAACAACGAGAGCGCTAACTTCTTCACAACTTCAAGCGCTCCCTCTCTCTTCAGCAACAACAACAACAACGCTGTCAGTGCAATCGCCAACGCCACTGCATTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCGGCACAAATGGGTGCATCTTCAAGCAACAGCACCGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAATCCGAGCAACACAGGCCACTGGTGAACGCTGCAAGCTACGGCGGCGGAATCTTCGGAGGGAACGTGAACGAACAGGGTAACAGCAACCTTCAGGACCTGATGAACTCGTTCGCTGTTGGTGGAAACTCTTCCATTTTTGAAGGTGGGTTTGAAGCGTATGATCATAACAGTAATAATAACAACAGGGAGGGAAAAGTTCATGCAATGAGTGGAAGCAGCAGCATTGGGGGGTCCGATAGACTCACCCGCGATTTTCTGGGTGTGGGTCAGATTGTTAGAGGCATGAGTGGGAGTGGAGGAGTTGCACAGAGAGAACAGCAGCAGCAACAACAACATGGCTTCAACTTGAGTTCTTTGGAAGCAGATCAACGAAATAACAGTAACAACAGCAATAATAATAACAATGCTGCGCCGTCAGGTCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCACTGA 1719 0.4927 MAASSSSASLFGFREEDQNQMKQQHSLTPSSSATPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGAAIGTHLFGTTANTIPLNLSQVTSHISNIQDPNTQPTELLRLGGAAARASQFDHLLGSPFRPSQQQPPFFMEPNQNYHPDQQQQQGLLQNKPFQQGLMQIPDHLSNNNSPFNLPFLSNATNNASFTENFNNTNNTSNNNESANFFTTSSAPSLFSNNNNNAVSAIANATALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSGSKSEQHRPLVNAASYGGGIFGGNVNEQGNSNLQDLMNSFAVGGNSSIFEGGFEAYDHNSNNNNREGKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQQQHGFNLSSLEADQRNNSNNSNNNNNAAPSGQAFGGGGGNFH* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2617 572 Gene3D Classic Zinc Finger 54 119 - -
Vra8g2617 572 SMART c2h2final6 147 167 IPR013087 -
Vra8g2617 572 SMART c2h2final6 112 142 IPR013087 -
Vra8g2617 572 SMART c2h2final6 71 93 IPR013087 -
Vra8g2617 572 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 526 - -
Vra8g2617 572 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Vra8g2617 572 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 526 - -
Vra8g2617 572 MobiDBLite consensus disorder prediction 542 561 - -
Vra8g2617 572 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vra8g2617 572 MobiDBLite consensus disorder prediction 1 55 - -
Vra8g2617 572 MobiDBLite consensus disorder prediction 477 498 - -
Vra8g2617 572 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vra8g2617 572 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vra8g2617 572 Gene3D Classic Zinc Finger 125 204 - -
Vra8g2617 572 MobiDBLite consensus disorder prediction 1 32 - -
Vra8g2617 572 MobiDBLite consensus disorder prediction 542 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2617 Vra-Chr8 44060954 44068201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2617 41 521 IDZ Gene Family AT2G02070 48.987 2.32e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g2617 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2617 K25870 - gmx:100799389 771.155