Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2602 ATGAGTGCAACTCTTCCAATCCATTTTTTCAAGATTATTCTTGAAACTAATGCTGAAAGGATAAAAGTACCTTGTAACTTTACAAGGAAATATGGGAGTTTTCTGCCAAATCCAGTGTTTCTTAGGCCTCCAGATTCAAAGGAATGGGTAGTATATTGGACAGAAGAAAATGGTGAGGTTTGGCTAGATAAAGGTTGGAAAGAGTTTACTGAAAATTATTCCTTGAGTTATGGATATTTTGTGATGTTCAAATTCAAAGGAACTTTTCAAATTGATGTGACCATACTTGATCCAAGTGCTGTAGAATTAGATTATTCTTCTTCTTGTAAGGGATCAGTTAACACCATGAATGCAACTCAGATGGGGCAAGAGGCCAGACCAATGCCATCAATGGTCTCTTCTCAACCTTGTGGAAAAACCCAGAATGTGGAAAGAGACGCCAATGTGCAGCAGCAACAAGTGTATGCAGATAAGGGTGGTCCTTCTCATCAATGGACAAATGTTCAAAAAATAACCAAGCAGCAACCAAATTGGGTGAGGTCTACTCAAAGTGGAAAATGTCTGAATAAGCCAAGGTCACTAAAAGCTCAGAAAATAAGCAAGAAATTTAAATCAAAATATCCTTACTTCACGCTTTTGATAGTGCAGGCTAAGTTGGAAGAAAATGCTATGAAACACGTGCCCAAGTTTTTGAATTGTATGAGTGGCCAGAAGGATGTGATGTTGCAGATGGAGAATAGGGAGTGGTGGGTGAAGTTAATCTGTTGTCGTGAGAAATATGATGTTTTCTCTTCTGGTTGGCCTAAGTTTGCAAAAGAGAGTAATATGGAAGTTGGTGACGTTTGTGTCTTTGAGTTTATTGATCCTGCAATTCCGCTGCTTAGAGTTCATGTTTTCAAAAGCTAG 906 0.3841 MSATLPIHFFKIILETNAERIKVPCNFTRKYGSFLPNPVFLRPPDSKEWVVYWTEENGEVWLDKGWKEFTENYSLSYGYFVMFKFKGTFQIDVTILDPSAVELDYSSSCKGSVNTMNATQMGQEARPMPSMVSSQPCGKTQNVERDANVQQQQVYADKGGPSHQWTNVQKITKQQPNWVRSTQSGKCLNKPRSLKAQKISKKFKSKYPYFTLLIVQAKLEENAMKHVPKFLNCMSGQKDVMLQMENREWWVKLICCREKYDVFSSGWPKFAKESNMEVGDVCVFEFIDPAIPLLRVHVFKS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2602 301 Gene3D - 4 100 IPR015300 -
Vra8g2602 301 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 300 - -
Vra8g2602 301 PANTHER B3 DOMAIN-CONTAINING 5 300 - -
Vra8g2602 301 CDD B3_DNA 208 300 IPR003340 GO:0003677
Vra8g2602 301 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Vra8g2602 301 Gene3D - 190 301 IPR015300 -
Vra8g2602 301 SMART B3_2 9 99 IPR003340 GO:0003677
Vra8g2602 301 SMART B3_2 210 301 IPR003340 GO:0003677
Vra8g2602 301 CDD B3_DNA 8 97 IPR003340 GO:0003677
Vra8g2602 301 ProSiteProfiles B3 DNA-binding domain profile. 210 301 IPR003340 GO:0003677
Vra8g2602 301 Pfam B3 DNA binding domain 228 299 IPR003340 GO:0003677
Vra8g2602 301 Pfam B3 DNA binding domain 17 93 IPR003340 GO:0003677
Vra8g2602 301 SUPERFAMILY DNA-binding pseudobarrel domain 7 99 IPR015300 -
Vra8g2602 301 SUPERFAMILY DNA-binding pseudobarrel domain 203 300 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2602 Vra-Chr8 43949783 43951306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2602 9 300 B3 DNA Binding Superfamily AT3G18990 22.917 3.71e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra8g2602 B3 3.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2602 - - vun:114192490 473.781