LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g2596	ATGTTTCACGAGAGCAGCGTGACTCGGTGGCAGCCACAGCCGGTTCAGCCCACTGAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGTGCTCTGCTCCTCGTGCCCGAGGACCTCCCCGACCGCTGGAACCAGATCGCCGTCCACGTTCCGGGCAAAACGCCGGCGGAGGTCAGGGAACACTACGACGCGCTCGTCCACGACGTCTTCGAGATTGACTCTGGCCGAGTCGAGGTCCCGAGTTACGTGGATGACTTGGCGCCACCACAACTCAGTGGCGGTGCCGGGAATTCTGCGTGGGACAGCGCTAATCAGATCTCATTCGGGTCCAAACCCAAGCAGGGCGAGACCGAAAGGAAGAAAGGCACGCCTTGGACTGAAGAGGAACACAGGCTGTTTCTGATCGGGCTGAGCAAATTCGGAAAAGGAGATTGGAGAAGCATTTCAAGAAACGTTGTTGTGACAAGAACACCGACTCAAGTAGCCAGCCATGCTCAAAAATACTTTCTCCGTCAGAATTCTGGGAAGAAGGAGAGGAAAAGATCAAGCATCCATGACATAACCACTGTGGATAGTAACTCTCTGCCTGTGCCCATTGACCAGAACTGGGTTCCTCCACCTGGTACTTCAATGCAGCAGTCACAAGACATGCTGTCGTACGCTTCCACCAGCATGCATGATCAAATGGGTCCATTTGGGTATTCCAACTATGGCTTTGAAATGTAA	726	0.5413	MFHESSVTRWQPQPVQPTEWTRYHDKLFERALLLVPEDLPDRWNQIAVHVPGKTPAEVREHYDALVHDVFEIDSGRVEVPSYVDDLAPPQLSGGAGNSAWDSANQISFGSKPKQGETERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSLPVPIDQNWVPPPGTSMQQSQDMLSYASTSMHDQMGPFGYSNYGFEM*	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g2596	241	SMART	sant	121	171	IPR001005	-
	Vra8g2596	241	SMART	sant	16	68	IPR001005	-
	Vra8g2596	241	CDD	SANT	124	169	IPR001005	-
	Vra8g2596	241	Gene3D	-	16	79	-	-
	Vra8g2596	241	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	117	173	IPR017930	-
	Vra8g2596	241	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	15	241	IPR043363	-
	Vra8g2596	241	MobiDBLite	consensus disorder prediction	88	125	-	-
	Vra8g2596	241	ProSiteProfiles	Myb-like domain profile.	12	66	IPR001005	-
	Vra8g2596	241	CDD	SANT	19	62	IPR001005	-
	Vra8g2596	241	ProSiteProfiles	SANT domain profile.	120	173	IPR017884	-
	Vra8g2596	241	SUPERFAMILY	Homeodomain-like	14	65	IPR009057	-
	Vra8g2596	241	SUPERFAMILY	Homeodomain-like	118	173	IPR009057	-
	Vra8g2596	241	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	120	172	IPR006447	GO:0003677
	Vra8g2596	241	MobiDBLite	consensus disorder prediction	95	112	-	-
	Vra8g2596	241	Pfam	Myb-like DNA-binding domain	124	169	IPR001005	-
	Vra8g2596	241	PANTHER	SYRINGOLIDE-INDUCED PROTEIN 1-3-1B	15	241	-	-
	Vra8g2596	241	ProSiteProfiles	Myb-like domain profile.	117	169	IPR001005	-
	Vra8g2596	241	Gene3D	-	123	174	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g2596	Vra-Chr8	43915933	43917962	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vra8g2596		Myb_DNA-binding	4.4e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g2596	-		-	gmx:547481	398.667