Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2591 ATGCTCCCAATCACCTGCATTCTTTTAATGTGCCTTCTAAGTTCTTTCTCACCCCCAATCGAAGCTCTCTTCAACCTCACCGTGCTACCCCACCAACACCCTCACCCCGAAGCCATAGTCCACGAACTTCAACGGAAGGTCAATGTCTCCTTTTCGAGAAGGCAAACACTGTCCAAGGACCAACAACCCGCCTGTCTCACCGGAAACCCAATCGACGACTGCTGGCGCTGCGACCCCAACTGGGCGGCCAACCGCCAGAAGCTGGCGGAGTGCGGCGTCGGGTTCGGCAAAGACGCCATGGGTGGAAAGGGCGGACAGATCTACGTGGTGACGGACTCGTCGGACCGCGACCCAGCCAACCCCGTCCCCGGCACGCTCCGGCACGCCGTCATCCAAGACGAACCTCTCTGGATCGTGTTCGCCGCGGACATGACCATTAACCTGAAGCACGAGCTCATCTTCAACAGCTTCAAAACCGTCGACGGCCGCGGCGCTAACGTCCACGTCACGGGCCACGGCTGCATCACTCTCCAGTACGTCTCCAACGTCATCATCCACAACATCCACGTCCACCACTGCACGCCCTCGGGGAACACGAACATACGCGCCAGTCCAACGCACGTGGGTTGGAGGGGGAGATCGGACGGCGACGGCATCTCCATCTTCGGCTCCCGGAAGATCTGGATCGACCACTGCTCCCTCTCTTACTGCACGGACGGCTTGATCGACGCCATAATGGGTTCCACCGCGATTACTATTTCCAACAACCACTTCGCCCACCACGACGAGGTGATGCTCTTGGGACACAACGATAAGTACTCCCCCGACCGTGGCATGCAGGTCACCATCGCGTTCAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGTTGCAGGCTCGGCTACATCCACGTCGTCAACAACGATTTCACCCAGTGGCAGATGTATGCCATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCGACCCCGATGCCAAAGAGGTGACGAAGCGCGTGGACACAGACGACAGAGAGTGGAGTGGGTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTTTTTGTACCATCGGGTGCAGGGCTGAGTGCACAGTATGCAGAGGCCACCAGTGTGCAACCGAAATCCGCCGTGCAAATTGACCAGCTAACCATGTATTCCGGTGTATTCGGTGATCCCAGGGATAATGGGGATCTGTATCCCGGTTTCAACGGTGGTGGGTCCGTGACCGGAGCGACCAGCAAGGGCAACAGTGCGGCGGGGTCCAGCAGTGACGATGGAGACTTTTTCGGAATGATATTCAGAGGAAGCAGCAGCCGTGCAGCGCCACCCTCATCACCGTCTTCTTTGTCCATTGCATTTGTTTCAACCTTTTTGTCTCTTGTAATTATTCTGATTTTGGACACTTCGACCAACCATCCCATCCTATGA 1488 0.5699 MLPITCILLMCLLSSFSPPIEALFNLTVLPHQHPHPEAIVHELQRKVNVSFSRRQTLSKDQQPACLTGNPIDDCWRCDPNWAANRQKLAECGVGFGKDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGSVTGATSKGNSAAGSSSDDGDFFGMIFRGSSSRAAPPSSPSSLSIAFVSTFLSLVIILILDTSTNHPIL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2591 495 Pfam Pectate lyase 151 332 IPR002022 -
Vra8g2591 495 PANTHER PECTATE LYASE 18-RELATED 7 430 IPR045032 GO:0030570
Vra8g2591 495 SUPERFAMILY Pectin lyase-like 52 384 IPR011050 -
Vra8g2591 495 PANTHER PECTATE LYASE 7 430 - -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Vra8g2591 495 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Vra8g2591 495 SMART amb_all 143 340 IPR002022 -
Vra8g2591 495 Gene3D - 68 410 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2591 Vra-Chr8 43830275 43833566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2591 1 495 Polysaccharide Lyase AT3G53190 61.323 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2591 K01728 - gmx:100808438 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2591 8 43830275 43833566 Vra8g2591 8 43830275 43833566 ECH