Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2588 ATGGCAGTTGCAGTGGGAGATATAGTTAACCCCAATGGCCTCCTCGTCCAAGTCATCACAGGACGATGGTTCGTGGTCTTCGCCTCCTTCCTTATCATGGCCGCCGCCGGCGCCACCTACATGTTCAGTTTATACTCCGGCGACATCAAATACGCCCTGGCCTACGACCAAACGACCCTCAACCTCCTCAGTTTCTTCAAAGACCTGGGGGGCAATGTCGGTGTGCTCTCCGGCCTCATAAACGAGATTACTCCTCCGTGGGTGGTTCTGGCCATGGGTTCCCTCCTCAACTTCTTCGGCTACTTCATGATATGGCTGGCGGTCACAAAAAGAATACCCAGACCGCAAGTGTGGCAGATGTGCCTCTACATCTGCATCGGCGCCAACTCTCAGTCCTTCGCCAACACCGGTTCCCTCGTGACCTGCGTCAAGAACTTCCCCGAAAGCCGTGGTGTTGTGTTGGGCATCCTCAAAGGCTACGTGGGTCTGAGTGGAGCCATCATCACGCAGCTCTACTACGCCTTCTACTACGACGACTCCAGGTCCTTGATTTTGCTCATAGCCTGGCTCCCAGCGGCTATCTCCTTCGCTTTCCTTCGTACCATTCGTTACATGAAACCCGTTCGACAACCCAACGAGCTTAGTGTCTTCTACAAGTTCTTGTATATCTCACTGGCTCTCGCTGGCTTCCTCTTGCTCATGATCATAGTTCAGAAAAAATTATCCTTCTCGCAAAGTGAATATGGCGCAAGTGCCGGGGTTGTGCTTCTCCTGCTCTTCCTTCCTCTTGCTGTTGTTTTTGTTGAACAACGTAAAATCAGGGAGACTCAAAAGCTAGCATTCATTGACCCATCCCCTGTGAAGATATCAGCTGAAAGAGAGCTACCGAAGTCGGCAAACGGTGACTCTAACCCGGTTTTGGGTCCGATTTCAAAGACCGAAGAGACCAGATGGTGGCAAAAAGTCTTTAGTCCACCGGCTAGAGGTGAGGACTATACTATACTTCAAGCACTATTCAGCTGGGACATGATACTTCTATTCGTAGCCGGCACGTGCGGTGTTGGGGGAACTTTGACCGCCATTGATAATCTTGGTCAGATTGGAAGCTCGCTGGGGTACTCCAAGGCTAGCATAAGCACGTTTGTGTCGTTGGTTAGCATTTGGAATTATATGGGTCGGGTTTTTTCTGGATTTGTCTCGGAACATTTTCTGCAACAGTACAAGTTCCCTCGACCACTGATGCTCACGCTGACCCTGCTCTTATCCTGCGTGGGTCACCTTCTGATAGCCTTCGACGTGCCGAACGGACTCTACCTTTCATCGGTGGTCATCGGGTTCTGCTTTGGCGCGCAATGGCCTCTGGTGTTCGCCATAATTTCGGAGCTGTTTGGGCTCAAGTACTATTCAACGTTGTACAACTTTGGCGGTGCAGCGAGCCCAATTGGGCTCTACCTTCTGAACGTGAGGGTGACCGGGCACCTGTATGACAAGGAGGGTCTGAGGCAACTTGCAGCGGCGGGAAAACCAAGAATTGTTGGCCAGGAATTGACTTGTACAGGGGGCAGTTGTTTCAAGTTGTCTTTCATCATTATCACTGCAGCCACCGTTTTCGGTGCCATAATTTCACTGATCTTGGTGGCTAGGACTATTGAGTTCTACAAAGGTGATATATACAAGAGGTACCGTGACCAAGCTGAGGAAAACACAACGACCGCCACGAGCACCGAGATGAAGGTGGTCGAAAGCGGTGGTGAGAGAAGACAAGAAGCCGTGGTGGAGTAG 1782 0.5112 MAVAVGDIVNPNGLLVQVITGRWFVVFASFLIMAAAGATYMFSLYSGDIKYALAYDQTTLNLLSFFKDLGGNVGVLSGLINEITPPWVVLAMGSLLNFFGYFMIWLAVTKRIPRPQVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYYAFYYDDSRSLILLIAWLPAAISFAFLRTIRYMKPVRQPNELSVFYKFLYISLALAGFLLLMIIVQKKLSFSQSEYGASAGVVLLLLFLPLAVVFVEQRKIRETQKLAFIDPSPVKISAERELPKSANGDSNPVLGPISKTEETRWWQKVFSPPARGEDYTILQALFSWDMILLFVAGTCGVGGTLTAIDNLGQIGSSLGYSKASISTFVSLVSIWNYMGRVFSGFVSEHFLQQYKFPRPLMLTLTLLLSCVGHLLIAFDVPNGLYLSSVVIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPIGLYLLNVRVTGHLYDKEGLRQLAAAGKPRIVGQELTCTGGSCFKLSFIIITAATVFGAIISLILVARTIEFYKGDIYKRYRDQAEENTTTATSTEMKVVESGGERRQEAVVE* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2588 593 SUPERFAMILY MFS general substrate transporter 22 549 IPR036259 -
Vra8g2588 593 Pfam Nodulin-like 22 267 IPR010658 -
Vra8g2588 593 MobiDBLite consensus disorder prediction 569 593 - -
Vra8g2588 593 CDD MFS_Mch1p_like 21 539 - -
Vra8g2588 593 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 13 584 - -
Vra8g2588 593 Gene3D MFS general substrate transporter like domains 334 553 IPR036259 -
Vra8g2588 593 PANTHER MFS TRANSPORTER 13 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2588 Vra-Chr8 43804194 43806302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2588 14 564 Nodulin-like Gene Family AT2G39210 68.231 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2588 - - gmx:100808975 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2588 8 43804194 43806302 Vra8g2588 8 43804194 43806302 ECH