Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2570 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCTCAGAACACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCCCAGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAACGTAGCAGAAAATAGTTTCATTGTAATTATGCTATCGAAGAGTAAGAGCACTTCTGGTGAAGGATCTACTACTTCAACTGCACCATCGACCAAGACACCACAGACTAGTGCACCTCCTACTTCTACAGCGCCAGTGTTAACAGCTCCTCAAGCTCCAGCTGCAACTGAGGCACCGCCGGCAACTGTTTCTGCACCTGTATCTACACCTTCAGTTCCAGCTCCTGCTACTATTTCTTCAGGAACTCCTGTCAGGGAGGGGTCAGATATCTATGGGCAGGCGGCTTCCAATCTCGTTGCTGGAAGCAATTTGGAGGGAACTATTCAGCAAATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAACAAGCTGAAGCTCCACTTGTAGCCAGAGCGCCTGCAGGTGCTCAACCCGCAAATCCTCCTGCCGCTGCTGCCCCACAAACAGCACAACCTGCTCCGGTTACCTCAACTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCGCAGGGCCTTCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTCCTACGCAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAACTCGGCAAACAAAATCCTCATCTTATGAGGTTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGGGAAGGGAATATATTGGGGCAGCTGGCTGGTGGCATGCCTCAAGCAGTGACTGTCACTCCCGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCGATCGTATTGGAGGTGTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGATGAACAATAG 1200 0.4875 MKVFVKTLKGTHFEIEVQPQNTVSEVKKSIETVQGADVYPAAQQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKSKSTSGEGSTTSTAPSTKTPQTSAPPTSTAPVLTAPQAPAATEAPPATVSAPVSTPSVPAPATISSGTPVREGSDIYGQAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARAPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2570 399 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Vra8g2570 399 SUPERFAMILY UBA-like 163 215 IPR009060 GO:0005515
Vra8g2570 399 MobiDBLite consensus disorder prediction 77 111 - -
Vra8g2570 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 164 207 IPR015940 -
Vra8g2570 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 398 - -
Vra8g2570 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 398 - -
Vra8g2570 399 SMART uba_6 166 206 IPR015940 -
Vra8g2570 399 SMART uba_6 354 391 IPR015940 -
Vra8g2570 399 SUPERFAMILY XPC-binding domain 270 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vra8g2570 399 CDD UBA1_Rad23_plant 160 209 - -
Vra8g2570 399 Pfam XPC-binding domain 273 328 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vra8g2570 399 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vra8g2570 399 Gene3D - 346 393 - -
Vra8g2570 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 351 392 IPR015940 -
Vra8g2570 399 Pfam UBA/TS-N domain 169 204 IPR015940 -
Vra8g2570 399 Pfam UBA/TS-N domain 354 389 IPR015940 -
Vra8g2570 399 SMART ubq_7 1 75 IPR000626 GO:0005515
Vra8g2570 399 SUPERFAMILY UBA-like 335 397 IPR009060 GO:0005515
Vra8g2570 399 TIGRFAM rad23: UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Vra8g2570 399 MobiDBLite consensus disorder prediction 221 251 - -
Vra8g2570 399 SMART CBM 271 314 IPR006636 -
Vra8g2570 399 Gene3D - 264 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vra8g2570 399 PRINTS DNA repair protein Rad23 signature 299 321 IPR004806 GO:0006289
Vra8g2570 399 PRINTS DNA repair protein Rad23 signature 348 364 IPR004806 GO:0006289
Vra8g2570 399 PRINTS DNA repair protein Rad23 signature 365 379 IPR004806 GO:0006289
Vra8g2570 399 PRINTS DNA repair protein Rad23 signature 380 395 IPR004806 GO:0006289
Vra8g2570 399 Gene3D - 159 209 - -
Vra8g2570 399 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vra8g2570 399 CDD UBA2_RAD23_plant 350 392 - -
Vra8g2570 399 Gene3D - 1 80 - -
Vra8g2570 399 MobiDBLite consensus disorder prediction 124 147 - -
Vra8g2570 399 CDD Ubl_Rad23 1 74 - -
Vra8g2570 399 MobiDBLite consensus disorder prediction 77 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2570 Vra-Chr8 43680772 43684368 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2570 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 7.43e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2570 K10839 - gmx:100814162 594.734