Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2538 ATGGTCTGGCTTCTTGTTTTGAAGTCGTTAATAATATTTTTGTCACAGCTTCTGCTGAATGTTTCAGCTCAGAATGGAAGGTGTCCACCATATTCGGACTGTGGATTTCTTGGGCGCATTCGGTTTCCTTTCACAACCACCGAGCAACAACACTGCGGCTTGTTGGCTATACATGGCTGTCAACGACTTCCTCCTTCCTCTCGCAAAACTATCAAACTAGGCACCTCCACATCATCCTCGTACTCTGTTTTAAAGGTAGAACCTAGTACCATATTTATCTCAGATGACGAACAACAACGTTATTTGGAAAACAGAAGTTGCAAAGCATTCAGCAATAATGTTACTCTTCCTCACACCTCTCCTTTAGCTTCTTTCCTCAACAAAAACGGTATCACCATCTTCAGATGCAATCAGTCCCTGAAACCTTCCCTTTCCAAGGATTTTTATAAATATTCAAACTGTTCTGAGTATGAAATCTTCTATGGCCCTCCAAATACACTAACTCCTCCGGGTTTCCAGTGGCCCAGCTCTTTAGCACCATGCTCAACCGTTCAGCTTTCTGTAGACGGAAGTTCTACAGACGACCCCTTTCTATTTGTAATTAGTACTAGTGTTATTGAAGTTCAGTTATCGAATGAATGTGAAAGGTGTCTTGGTGATGGAAAAGGACGATGTTTACTTGACACTGAAGGAAAATTCTATTGCGCCACAGGGAGCAGAAGCTGGGTTACGAAAATGGTACTGGGACTCGCATCAGCTGTTACAGTTATTTTACTGATAGCGATGGTCAAGATCTACTATACAAGAAGGAAGAAGCAAAATCCAACCAATCAACGGATAGAGGTCTTTCTGAAAAAACATGGAGCCCTTCAGACTAAGAGGTATGGTTATTCTGAGATAAAGAAAGTGACCAACTGTTTCAGAAACAAACTAGGCCAAGGAGGATTCGGTAGTGTATACAAGGGAAAATTACAGGATGGACGTTACGTTGCTGTGAAGATCCTAAACGAATTAAAAGATGACGGAGAAGAATTCATCAATGAAGTTGCCAGTATTAGCAGAACTTCTCATATTAACATTGTTACGCTTTTGGGGTTCTGTTGCGATGGTTTTAAACGAGCTTTGATTTATGAGTTTATGTGCAATGGATCACTTGAAAAACTTATCTGTCAAGAAAATGCTCTTATCACACATCATCAATTGGACTATCAAATGTTGTATCATATTGCAATTGGTGTTGCTAGAGGACTAGAATACTTGCACAAAGGCTGCAATACTAGAATTTTACACTTTGACATCAAACCTCATAACATTCTGTTGGATGAGAATTTCAATCCCAAGATTTCAGATTTTGGTCTGGCAAAAATTTGCTCCCGAAAAGAAAGTATGGTGTCAATATTTGGTGCTAGAGGAACAGCGGGCTATATTGCTCCAGAAGTTTTTTCTAGAAATTTTGGTGTAGTATCACATAAATCAGATGTTTACAGTTATGGAATGATGATCTTAGAAATGATTGGAGGAAAGAAGAACACTATAACTGGGCTAGACCCCTCAAGCGAAATTTACTTTCCCGATTGGATATACAATCGTATTGAATCAAAGCAAGAACTTGGCTTACAAAACATGCGAAATATAAGTGATGAAAAATTGGTAAGAAAGATGGCAATTGTGGGCTTATGGTGCATACAAACTCATCCTTCAGCCCGACCTGCCATAAGTAAAGTGTTGGAAATGCTAGAAAGCAAAGTAGAGTTATTGCAAATTCCACCTAAACCTGTATTGTCTTCTCCTTCCACTTCTCCCATCCATTTATCAAGTGAGACATTGTAA 1830 0.394 MVWLLVLKSLIIFLSQLLLNVSAQNGRCPPYSDCGFLGRIRFPFTTTEQQHCGLLAIHGCQRLPPSSRKTIKLGTSTSSSYSVLKVEPSTIFISDDEQQRYLENRSCKAFSNNVTLPHTSPLASFLNKNGITIFRCNQSLKPSLSKDFYKYSNCSEYEIFYGPPNTLTPPGFQWPSSLAPCSTVQLSVDGSSTDDPFLFVISTSVIEVQLSNECERCLGDGKGRCLLDTEGKFYCATGSRSWVTKMVLGLASAVTVILLIAMVKIYYTRRKKQNPTNQRIEVFLKKHGALQTKRYGYSEIKKVTNCFRNKLGQGGFGSVYKGKLQDGRYVAVKILNELKDDGEEFINEVASISRTSHINIVTLLGFCCDGFKRALIYEFMCNGSLEKLICQENALITHHQLDYQMLYHIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICSRKESMVSIFGARGTAGYIAPEVFSRNFGVVSHKSDVYSYGMMILEMIGGKKNTITGLDPSSEIYFPDWIYNRIESKQELGLQNMRNISDEKLVRKMAIVGLWCIQTHPSARPAISKVLEMLESKVELLQIPPKPVLSSPSTSPIHLSSETL* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2538 609 Pfam Protein kinase domain 309 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2538 609 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vra8g2538 609 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 12 607 - -
Vra8g2538 609 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 607 IPR045874 GO:0004672
Vra8g2538 609 Gene3D Transferase(Phosphotransferase) domain 1 380 595 - -
Vra8g2538 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vra8g2538 609 Gene3D Phosphorylase Kinase; domain 1 280 379 - -
Vra8g2538 609 SUPERFAMILY Protein kinase-like (PK-like) 288 580 IPR011009 -
Vra8g2538 609 SMART serkin_6 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2538 609 ProSiteProfiles Protein kinase domain profile. 305 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2538 Vra-Chr8 43293758 43296895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2538 1 606 Receptor kinase-like Gene Family AT1G66910 37.652 2.39e-122 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra8g2538 Pkinase 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2538 - - gmx:100784387 711.835