Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2537 ATGAGTCCGGTTCATGGATTCCTATTACTGCTTTTGTTTCTTAAGTTTATGCCACTTCTCTTGGCGGCCGGGGACCATGGAAGGTGTCCACCTTCCTTTCCTTGTGGATATCTTGGCAATCTCACTTTCCCTTTTACTATAACTGGACGCCACCACTGTGGCTTCTTGTCCATACGAAATTGTAGTGATGATAATCCACATAAGCCCAAATTTATCCAAGTACAAGCAAATGGAGGTTGGGTTCAGGTTGTAAACATACATCAGCTTCTTAGTAGCCCTACTACCCGTCTCACAACTTTTCAATTTAGAGACGAACATTTTTATGACCTTCTGCAGAACCGAAGTTGTGAAGCTTTCACAAACAATTATACTCTTCCTCTTAAATCTCGCTTTGCTACTTTTAGATTGTCATACAGCACAAGTCTGTTCTTGTGCAACAAGACCCTCCATGTCACAACTATAAATGTCAGCAAGTATAATGGTTGCCCTGGCTATGATATCTACCACAACCACATCATGACAGACGAGGATGTGTCTCGGAGTTCTTTGACAGCGTGTAAAAAGATTCTGCTTCCAATTAAAGACGTGCCTGACGCCAATGACCCATTTACTTTCCTAACTGGCGATGTCACTGTTATGTTAACATTAACAGATCAATGTTCAGATTGCTACTATCGCAAAGGAGGGCAGTGTCAACTTGACAGCAGAGAGCAATTTTCTTGTGCCAACAGTTACGAGGAAACCAGAAAGAAGATGTGGAAGGTGGCAACAGCTTCGACCATGGCGGCTGCTGTACTCGTAGTGCTGATGGTCTTGGTTTGCTGCTTCAGGACAAAGATCTTCTATCCTTTGCTTTGGAAGGAAAATCCGACTCATCGCGTTATTGAGGACATTTTGAAGGAACAAGGACCCCTTACCACAGCCAGGTTCAGTTATTTAGAGGTTAAGAAAATGACCAACTCTTTCAGAAACAAATTAGGACAAGGGGGATTTGGTAGCGTGTACAAAGGGAAATTACACGATGGAAGTGATGTTGCAGTGAAAATTTTAACTGTATCTAAAGGCAATGGAGAAGAATTCATCAATGAAGTTGTGAGTATTAGTAGGACTTCACATGTTAATATCATTAGACTTTTAGGATTTTGTTTTGACAATACTCACCGGGCTCTAATATACGAGTTTATGCCTAATGGATCTCTTGACAAGTTCATCTATGAAGACAAAAATGCATCAAAGAATGTTCACCAACTGGATTGGAAAATATTGAATGATATTGCAATTGGCATTGCTCGTGGATTAGAGTACTTATACAGAGGCTGCAACACTAGAATTTTACATTTTGACATAAAACCTCACAACATATTACTGGACGAGGATTTCTGTCCAAAAATTTCAGATTTTGGACTTTCAAAAGTATGTCCTAGAAAAGAAAGTATGGTATCCATATTTGATGCCAGAGGAACTGCAGGATATATTGCTCCTGAGGTTTTTTCCAGAAACTTTGGTGTTGTGTCACACAAGTCAGATGTTTATAGTTATGGAATGATGATCTTAGAAATGGTTGGAAGAAGAAAGAATATTAAGACAAAAGTAGACCGGCCGAGTGAAATATATTTTCCTCATTGGATTTATAGTCGTCTTGAATCAAATTCAGAGCTTGGTTTAGAAAATGTGAGAAATGAAAGTGAGGATGAAATGGTGAGAAAGATGACAATAGTGGGCTTGTGGTGCATACAAACTCATCCTGCAACTCGACCAACCATAAGCAAAGTGGTGGAAATGTTAGAAAGCAAAGTTGAGTTATTGGAAATTCCACCCAAACCATTTTTATCAGATCCTTCAACTTCTCCAGTCAACTTGTCAGGTGAGACATTATAA 1878 0.3956 MSPVHGFLLLLLFLKFMPLLLAAGDHGRCPPSFPCGYLGNLTFPFTITGRHHCGFLSIRNCSDDNPHKPKFIQVQANGGWVQVVNIHQLLSSPTTRLTTFQFRDEHFYDLLQNRSCEAFTNNYTLPLKSRFATFRLSYSTSLFLCNKTLHVTTINVSKYNGCPGYDIYHNHIMTDEDVSRSSLTACKKILLPIKDVPDANDPFTFLTGDVTVMLTLTDQCSDCYYRKGGQCQLDSREQFSCANSYEETRKKMWKVATASTMAAAVLVVLMVLVCCFRTKIFYPLLWKENPTHRVIEDILKEQGPLTTARFSYLEVKKMTNSFRNKLGQGGFGSVYKGKLHDGSDVAVKILTVSKGNGEEFINEVVSISRTSHVNIIRLLGFCFDNTHRALIYEFMPNGSLDKFIYEDKNASKNVHQLDWKILNDIAIGIARGLEYLYRGCNTRILHFDIKPHNILLDEDFCPKISDFGLSKVCPRKESMVSIFDARGTAGYIAPEVFSRNFGVVSHKSDVYSYGMMILEMVGRRKNIKTKVDRPSEIYFPHWIYSRLESNSELGLENVRNESEDEMVRKMTIVGLWCIQTHPATRPTISKVVEMLESKVELLEIPPKPFLSDPSTSPVNLSGETL* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2537 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vra8g2537 625 SUPERFAMILY Protein kinase-like (PK-like) 302 596 IPR011009 -
Vra8g2537 625 Pfam Protein kinase domain 324 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2537 625 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 623 IPR045874 GO:0004672
Vra8g2537 625 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vra8g2537 625 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 7 623 - -
Vra8g2537 625 SMART serkin_6 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2537 625 ProSiteProfiles Protein kinase domain profile. 320 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2537 625 Gene3D Transferase(Phosphotransferase) domain 1 395 608 - -
Vra8g2537 625 Gene3D Phosphorylase Kinase; domain 1 296 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2537 Vra-Chr8 43287461 43289975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2537 5 621 Receptor kinase-like Gene Family AT1G66910 36.986 2.48e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra8g2537 Pkinase 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2537 - - gmx:100783861 814.298