Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2533 ATGTTTCCTGTTTACACGTTCATTATGGTTTTCCTTGTGTGGGTTGGGAATGCAAATGGGCACAAGGATGATTGTCCATTCTGGTTTGATTGTGGAAACCATGGGAAATTCGGTTACCCTTTCACCACGCTACAACGCCAAGATTGTGGCATATGGCCAATCCATGGTTGTGATGATCACAACCCAAACTCAGGGCAAGGGGTAACGTTAAAGATCGGATCATGGTGGATTAAGGTTAGAAAGTTTGAGATGCAATCGATTATTACTACTGTCTACTTCATTGATGATCATCTCAATCATCTCCTGCAATCCGATAGTTGTGAGACATTCAACCACAATATTTCACTCCCTCCTAGCTCTCCCTTAGGTTACTTCACTATCAACAACAACATAACCATTTTCAAGTGTAACCGCACTCGCCAAGTTAAGACCCCAAGAACATTCCTCAAAAATACTAGCTGTGACTATGACATCTTCATGGGGCCTCCACACTCTGATGATGTGTCTCACAACTCTCTAGCTTCCTCCTGTTCAATGGTTCAGCTTCCCGTCAATGGCTATGCAGTCTCTGCAAATCCCTTTGCATTCTTAACTGCTGACATTCCCTTGCAGTTCCATCCGCCAGATGAGTGCTTCCAGTGTTTGGGTGCCGGAAGCCTTTGTCACCTCGACAACCAACGAAAACCTCATTGCGTCCCAAGGAAGGATAAAAGTCCAGCTTGGAAGCTAGGATTGATAATAGGTAATAAACATGATCTAATACTCCAGACAACAATGGCAGGTATAGGTGCTGGATTGTGCAATGTAATAACATTGGTGTTGATCCTCACATTACGGCGCTGTAAATATGGTGGTGCACTGGCTCTGTTCCGATCAAGAAATGGAGCCGATCCTCACGACAATCCCGACATAATGACAGATAGGATCTTCTTTGGAGTACCCGTCTTCTCTTATAAGGAGCTTCAAGAAGCAACGAACAATTTTGACTGCAACAGAAAGCTAGGGGAGGGAGGATTTGGAAGCGTTTACTATGGTAAGCTCGAAGATGGACGGGAAGTTGCAGTGAAATTGTTGTTCGAGCACAACTACAGGAGAGTGCAACAATTTATGAATGAAATTGAGATTCTCACTCACTTGCGACACAGGAACCTCGTCTCCCTCTACGGTTGCACTTCACGTCACAGCCGGGAGTTACTGCTTGTGTACGAATACGTCCCAAACGGCACTCTTGCTTACCACCTCAACAGAAGGGCCAAGTTGCTGACGTGGCCAATTCGGATGCAAATTGCGGTGGAGACCGCCACTGCCTTGGCTTATCTTCACGCTTCCGACATCATTCACCGTGACGTGAAAAGCAGCAACATTCTACTTGACACGAATTTTTTGGTTAAGGTGGCAGATTTTGGACTTTCGAGATTGATTCCGACCGATGCAAGCCACGTGTCAACCGGTCCGCAGGGGACTCCGGGGTACCTTGACCCTGAGTATTTCCAGCACTACCAGCTGACGGACAAGAGTGATGTATTTAGCTTTGGGGTTGTGGTTGCTGAGCTGATATCCTCGTTGCCTGCGGTCGATGCCGGCAGGGAAAGTGATGAGATAAACTTGGTGAGTCTTGCCATAAAGAAGATTCAAAATGGGAAACTCGATGAGTTGGTGTGCAAATCGCTTGGCTTTGAGTCAAACGAAGAGGTGAGAAGGATGGTGAGTTCAGTGGCGGAATTGGCCTTCCTGTGTGTGCAAGGAGACAGACAATTAAGACCTTCCATGGATGAAGTTGTGGAAGCACTGCAGAAAATTCAAGCTGGGATTGGTGAGTGCGACATGTAG 1830 0.4639 MFPVYTFIMVFLVWVGNANGHKDDCPFWFDCGNHGKFGYPFTTLQRQDCGIWPIHGCDDHNPNSGQGVTLKIGSWWIKVRKFEMQSIITTVYFIDDHLNHLLQSDSCETFNHNISLPPSSPLGYFTINNNITIFKCNRTRQVKTPRTFLKNTSCDYDIFMGPPHSDDVSHNSLASSCSMVQLPVNGYAVSANPFAFLTADIPLQFHPPDECFQCLGAGSLCHLDNQRKPHCVPRKDKSPAWKLGLIIGNKHDLILQTTMAGIGAGLCNVITLVLILTLRRCKYGGALALFRSRNGADPHDNPDIMTDRIFFGVPVFSYKELQEATNNFDCNRKLGEGGFGSVYYGKLEDGREVAVKLLFEHNYRRVQQFMNEIEILTHLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTLAYHLNRRAKLLTWPIRMQIAVETATALAYLHASDIIHRDVKSSNILLDTNFLVKVADFGLSRLIPTDASHVSTGPQGTPGYLDPEYFQHYQLTDKSDVFSFGVVVAELISSLPAVDAGRESDEINLVSLAIKKIQNGKLDELVCKSLGFESNEEVRRMVSSVAELAFLCVQGDRQLRPSMDEVVEALQKIQAGIGECDM* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2533 609 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vra8g2533 609 Gene3D Phosphorylase Kinase; domain 1 304 404 - -
Vra8g2533 609 ProSiteProfiles Protein kinase domain profile. 328 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2533 609 SUPERFAMILY Protein kinase-like (PK-like) 308 600 IPR011009 -
Vra8g2533 609 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 604 IPR044652 -
Vra8g2533 609 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 12 604 - -
Vra8g2533 609 Pfam Protein tyrosine and serine/threonine kinase 330 597 IPR001245 GO:0004672|GO:0006468
Vra8g2533 609 Gene3D Transferase(Phosphotransferase) domain 1 405 605 - -
Vra8g2533 609 SMART serkin_6 328 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2533 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2533 Vra-Chr8 43258666 43260870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2533 29 607 Receptor kinase-like Gene Family AT1G25390 45.068 9.28e-151 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra8g2533 PK_Tyr_Ser-Thr 2.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2533 - - gmx:100789695 892.108