Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2529 ATGTTTTCAGTCTTCAATCATCTCCATCCACAGCTACAGAGAAAACCTTCAAAGATGATAAACCCAAACACCCAGTTTTTTATCCTCAAACCCTTCTGTTTTCCCATCATCATCTTCTTCCTCCTTGCCCAAATCACTTCTTCTCAAGTCGACCCTAAATTCGTTGCATGTGCACCCAAAACCTGCCCCAACAACAACCAATCTATAAGCTTTCCTTTTTACATTCGAGGAACGCAAGAACCTTACTGTGGGAGCCCTGGTTTTGAAATCTCCTGTTCTCCAGATGGCTTCCCTATCCTCAATCTCTCTCACACTCAATACCTAGTTCATCATATCTTCTACCAAAGTCAGTCCCTTCGTGTGTCCAACGCCGCGTTCTCAACTTTGCAATCCAACACCACCAGAGGTTGTCTTGTTCCAACTCAGAATCTCACTCTTCCTCCTACTAACGTGTTCCGTGTTGGTCCGAATCAAAGGGACATGGTGTTGTTCTACGGCTGTGACGCACCTTCGCTTCACGAACACAGAGTTGGGTGTTCTGCAGAAAACGAGACGAGTTATGTTTTGGCATTGGATAAAAGAGATGAAAATATAAGCGTTGTGGGAGAGAACTGTAAGGGTGAGGTGGTGGATACGGTTGTGGAAGATGGAATAGGAGGGGTTGCTGAAGCGTTGAGCAAAGGGTTTTTGCTGTCGTGGACTGCAAGTAACTGCAGCGTCTGCAACAGCACCGGAGGGAGGTGCGGTTTCGATTCAGATATGTACGCTTTCAGGTGTTATTGCACTGACAGAGTTCATTCTGCCAAATGTGGAGCGGATGATCCAGGGATAACCAATAAGAACAGCGCTACAATGGTGAAAATAGCTTTGGCAGTGGGGGTTGTTGGAGTTGTAGTGGTGGTGGTCTTGGCTTGTTGGTTTAGGACAAAGATCTTTCCCTCGTCTCTTTTGTTTCGGAGGGATAACCCAACCCATCATGTTATTCAGAAGATTTTGAAGGAACACGGACCTCTTCCTATAACTAGGCACAATTATTCAGAGATTAAGAAAATGACCAACTCTTTTAAAAACAAGTTGGGGCAAGGAGGCTTCGGTACCGTATATAAAGGGAAGTTACATGATGGACGTGTTGTTGCAGTAAAGATTTTAGCTGAATCGAAAGGCAACGGAGAAGATTTTATCAATGAAGTCGCAAGTATTAGTACAACTTCACATGTTAACGTTGTCAGACTCCTAGGATTTTGTTTTGATGGTTCTAAACGTGCTCTGATATATGAGTTTATGACTAATGGATCTCTTGACAAGTTCATATATCAAGACAAAAATCCATTACAGGTTACTCATCAATTGGATTGCCAGATAATGTATAACATTGCAATTGGCATTGCTCGTGGATTGGAGTATTTACACAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCACAACATATTACTGGATGAGAATTTTAGCCCCAAAATCTCAGATTTTGGACTTGCAAAAATATGTCCAACAAGAGAAAGTGCGGTATCAATTACTGGTGCAAGGGGAACTGCAGGTTATATTGCTCCAGAAGTTTTCTGCAGAAACTTTGGCGCCGTGTCACATAAATCGGATGTTTACAGTTATGGAATGATGATCTTGGAAATGGTTGGAGGAAGAAAGAATATAAAGGTTGAAGTCGATCGTTCAAGTGAATTGTATTTTCCTCATTGGATTTACGATCGTCTTGAATCAAATCAAGAGCTTGATCTACAAATTGTAAGGAATGAAGGTGATGACAAAATGATGAGGAAAATGGCAGTGGTAGGTTTGTGGTGCATACAAACCCACCCTTCAAGTCGACCAACAATAAGTAGCGTGGTAGAAATGTTAGAGAAAAAAGTTGAATTATTGGAACTTCCGCCTAAACCGTTTTTGTCTTCTCCTTCACCATCTCCGCTTCATTTGTCACAGGACACACTATAG 1977 0.4203 MFSVFNHLHPQLQRKPSKMINPNTQFFILKPFCFPIIIFFLLAQITSSQVDPKFVACAPKTCPNNNQSISFPFYIRGTQEPYCGSPGFEISCSPDGFPILNLSHTQYLVHHIFYQSQSLRVSNAAFSTLQSNTTRGCLVPTQNLTLPPTNVFRVGPNQRDMVLFYGCDAPSLHEHRVGCSAENETSYVLALDKRDENISVVGENCKGEVVDTVVEDGIGGVAEALSKGFLLSWTASNCSVCNSTGGRCGFDSDMYAFRCYCTDRVHSAKCGADDPGITNKNSATMVKIALAVGVVGVVVVVVLACWFRTKIFPSSLLFRRDNPTHHVIQKILKEHGPLPITRHNYSEIKKMTNSFKNKLGQGGFGTVYKGKLHDGRVVAVKILAESKGNGEDFINEVASISTTSHVNVVRLLGFCFDGSKRALIYEFMTNGSLDKFIYQDKNPLQVTHQLDCQIMYNIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICPTRESAVSITGARGTAGYIAPEVFCRNFGAVSHKSDVYSYGMMILEMVGGRKNIKVEVDRSSELYFPHWIYDRLESNQELDLQIVRNEGDDKMMRKMAVVGLWCIQTHPSSRPTISSVVEMLEKKVELLELPPKPFLSSPSPSPLHLSQDTL* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2529 658 SMART serkin_6 353 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2529 658 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Vra8g2529 658 Pfam Wall-associated receptor kinase C-terminal 183 263 IPR032872 -
Vra8g2529 658 PANTHER RUST RESISTANCE KINASE LR10-RELATED 39 647 IPR045874 GO:0004672
Vra8g2529 658 CDD STKc_IRAK 359 630 - -
Vra8g2529 658 ProSiteProfiles Protein kinase domain profile. 353 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2529 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vra8g2529 658 Pfam Protein kinase domain 356 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2529 658 Gene3D Transferase(Phosphotransferase) domain 1 428 641 - -
Vra8g2529 658 SUPERFAMILY Protein kinase-like (PK-like) 337 629 IPR011009 -
Vra8g2529 658 Pfam Wall-associated receptor kinase galacturonan-binding 57 122 IPR025287 GO:0030247
Vra8g2529 658 PANTHER - 39 647 - -
Vra8g2529 658 Gene3D Phosphorylase Kinase; domain 1 330 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2529 Vra-Chr8 43226473 43230680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2529 23 656 Receptor kinase-like Gene Family AT5G38260 38.138 7.63e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra8g2529 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2529 - - gmx:100778621 858.981