Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2510 ATGGCTAAAGCTGATATGGCTGACATGGATATCCCTTCTTTTCTGGATGTAGTAGTTCAAAAGGATGTTCCTGTCTCCATCATCTACTCTGGAGTGTTTGGTGATATAAACAGGAAAGCTTTAGCTACAGGATTGTGTTATTTCCTTAAGGAGCCTATCACTCCCAATGATCTTCAATATCTCTGGCAACATGTGTATCACTCAAGACCCTATTCACCCACAAACACTCAAAATGCAGACTTCCATGCAAAGGGATTACAGAATACCCAGATGAAACAGGCGACAAACGCCCAATGCCAGGATCTTGGAGCAAAAAACGGAAGAAGCGATGCTGATACATTAGGCAAAGAAAAAGGAAAGAAAACCCTCAAGAACACAATGCCAACCACAAAGTGCAAAGGTCCCAAAACATATGGAAAAAGAAAGCATGATGATTATGCATTCAAGAAAAAAGAAAAGAGAGATGTTGTGCAGGAAAAGCCAGATTGGTCGGGATCAGCCAAGATGAACATTAACAACCTCAATGAATATTTCAGAATGTCTGAGCACAAAAAACGTTTGAGTGTTTGGACTCCTGAATTGCATCAAAAGTTTTTAGAAGCAGTGAAAGAATTAGGAGACAACATTGCTCGTCCAAAACAGATATTAGTTCTGATGAATGTCAGTGAGCCTCACCTCACTGCTCGCCAAGTTGCAAGTCATCTGCAGAAATACAGATTGCGTTTGAAAGGTGAAGAGAGATCTCTCAATTCTGATTTGCCTAGAAGCATAAAAAGAGCATTTGATCCAGGTCTCCCAGCACCAAACGTTTTCTTGAATGTGAACCATAATCAAGATCAGATTTCAGTGAACAGCTTGGGAATGGAATTCACAGGTGCTTCAATGGATTCAAACATACCTGGAACTGATTTGTGTGATTTCGTAGAAACGTTTCTGGAAGACTCTGACTGTTTCAATTTGTATAAATATGAAACCAATCCTGCTGCTGTCGATCAATGTGCTGAGATGCTAAGAAATATTCTAGAAGGAAGGGGTTCCTCTTAA 1044 0.4013 MAKADMADMDIPSFLDVVVQKDVPVSIIYSGVFGDINRKALATGLCYFLKEPITPNDLQYLWQHVYHSRPYSPTNTQNADFHAKGLQNTQMKQATNAQCQDLGAKNGRSDADTLGKEKGKKTLKNTMPTTKCKGPKTYGKRKHDDYAFKKKEKRDVVQEKPDWSGSAKMNINNLNEYFRMSEHKKRLSVWTPELHQKFLEAVKELGDNIARPKQILVLMNVSEPHLTARQVASHLQKYRLRLKGEERSLNSDLPRSIKRAFDPGLPAPNVFLNVNHNQDQISVNSLGMEFTGASMDSNIPGTDLCDFVETFLEDSDCFNLYKYETNPAAVDQCAEMLRNILEGRGSS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2510 347 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
Vra8g2510 347 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 269 IPR045279 GO:0009736
Vra8g2510 347 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 1 269 - -
Vra8g2510 347 SUPERFAMILY Homeodomain-like 184 243 IPR009057 -
Vra8g2510 347 Pfam Myb-like DNA-binding domain 189 239 IPR001005 -
Vra8g2510 347 Gene3D - 181 244 - -
Vra8g2510 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 243 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2510 Vra-Chr8 43059962 43062358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2510 1 262 Response Regulator Gene Family AT1G68210 27.547 3.06e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g2510 Myb_DNA-binding 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2510 - - vra:106770703 700.279