Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2506 ATGGGTTTGCAAAGCGAACTAAACGACGTGTCGTCGGGTTCGATTCCGCTCCTGGTCTTGGCGCAGATAGCCATGTGCGTCAACTACCTCCGCTCGATGCTCTTCGCGCTGTTGCAATCCCTAGGTCTCGCCCGATTCCACACGCACCAGATCGTCGACGACCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGCCTCATCATGCTCTCCGATCAGCTCACCCTCAACAACCAATTATTCTTCTACAAAGGAGCCGCCCACGACCACTCCTGCGTGGTGTGCCAGGCCACCTTCCAGGACGGCGACCAGCTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCGCTGCTTCGACGGCTGGCTCCACCACTATAAGTTCAACTGTCCTCTCTGCCGCTCCCCGCTCCTCTCCGAGGAGCGCGTGGCCCTCACCGAACGCCGCCTCGGCCAACAACTCATCTCTTGGTTCTCCCTTCACTGA 486 0.6173 MGLQSELNDVSSGSIPLLVLAQIAMCVNYLRSMLFALLQSLGLARFHTHQIVDDRFLAAVGSGLAGLIMLSDQLTLNNQLFFYKGAAHDHSCVVCQATFQDGDQLRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLLSEERVALTERRLGQQLISWFSLH* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2506 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 143 IPR013083 -
Vra8g2506 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Vra8g2506 161 SUPERFAMILY RING/U-box 86 139 - -
Vra8g2506 161 SMART ring_2 92 133 IPR001841 -
Vra8g2506 161 Pfam Ring finger domain 91 134 IPR001841 -
Vra8g2506 161 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 159 - -
Vra8g2506 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2506 Vra-Chr8 43002142 43003164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2506 1 161 C3H Transcription Factor Family AT1G15100 46.951 3.81e-46 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2506 K16282 - gmx:100803789 285.419