Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2493 ATGGAGACGCCGTTCCAGGTGAGTCAAGATTCTCCTGACTGGAGGAATCCTGGAAATAATTTGTTTGTTAATTTCCTGCCCTGGTGGACAACTGAGAAGGATCTTTGGGAGCTTTTCAGTACACAGGGAGAGGTTGTCGAAAGCCACGTGGTGAGAGATTTTCATACCAAGGAATCTCGTGGATTTGCTTTTGTCACTATGGCAACTACAGAGGACGCTAAGCGCTGTATCAAGAAGTTCGATCACACTGTTCAGTTTGATCGGGTGATAGTTGTGGAAAGGTCAAAGAGGCAGCGTCCCAGGACTCCAACTCCTGGCAAGTACAGTGGTACAAGATACGACCATGAACAGAGAAGGGAGCGATCTCGTAGTCTGTCACCTGTAAGAAAGGAGGATAGATATCGTTTTTCAAGTGATCGATCTCGTAGTCAGACACCGATACAAAAGGAGGATAGTTATTCAAGGGACCGGCGAGGAAGATCACCTTCTCCACGAACACATAGGAGGCGGAGGGATTAG 519 0.474 METPFQVSQDSPDWRNPGNNLFVNFLPWWTTEKDLWELFSTQGEVVESHVVRDFHTKESRGFAFVTMATTEDAKRCIKKFDHTVQFDRVIVVERSKRQRPRTPTPGKYSGTRYDHEQRRERSRSLSPVRKEDRYRFSSDRSRSQTPIQKEDSYSRDRRGRSPSPRTHRRRRD* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2493 172 SUPERFAMILY RNA-binding domain, RBD 10 122 IPR035979 GO:0003676
Vra8g2493 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Vra8g2493 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Vra8g2493 172 MobiDBLite consensus disorder prediction 95 172 - -
Vra8g2493 172 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 8 166 - -
Vra8g2493 172 MobiDBLite consensus disorder prediction 111 160 - -
Vra8g2493 172 Gene3D - 8 131 IPR012677 -
Vra8g2493 172 PANTHER OS08G0385900 PROTEIN 8 166 - -
Vra8g2493 172 SMART rrm1_1 20 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2493 Vra-Chr8 42885430 42886593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2493 1 107 Eukaryotic Initiation Factors Gene Family AT1G22760 30.631 5.51e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2493 K12897 - tdc:119285213 133.265