Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2482 ATGGGGGATCACTTTGAATTACTGGTCGATCGATTGCTTACTGAATCCACATTAGAAGCTGCAATTGAAAGCAGGAATAAGTCTATGTTGGCTGCATCCTCAGCAGTGAATGACGTGAAAATTGATCTCAATTTGATGAAAGTGGGTCTGGATGATATAAAATTTCCCGGGAAGCTGGTAGAATGCAGGATATGTCATGATGACGATGAAGATACCAATATGGAGACACCCTGCTCTTGTTGTGGTAGTTTGAAGTACGCTCACCGTAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAGGCCAGGTTATACTGCTCCTCCACCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGGAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACACATTTGGTTAGCATGGTCCCCACTGATCAAAACGTTAACACTTCTAACTATGATCAGTATTCAGCCTCTGTTACAGGAAGTGTGATTTGCTGTCGTTCGATTGTTGTCATTTTCATGCTTCTTCTGATTTTAAGACACACACTTCCCCTTGTAATTAGTGGAAATAAGGAGTATTATTTCCCACTCTTTTTGCTGTTGTTGTTTCGGACTGTGGGAGTTGTTCTTCCAATATACTTCATGGTTAGAGCAGTGGCATTAATCCAGCGCCATCGGAGACAGCATCGAGAGCATCTTAATGCCTTGGCCATTTCATCTGACGATGAAAGCGAGCAAGCAGATTTGCAGCCTCAGCCTCAGCCTCATATCATACATTTACAGGAGCAGCATTGA 825 0.4279 MGDHFELLVDRLLTESTLEAAIESRNKSMLAASSAVNDVKIDLNLMKVGLDDIKFPGKLVECRICHDDDEDTNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFRPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNVNTSNYDQYSASVTGSVICCRSIVVIFMLLLILRHTLPLVISGNKEYYFPLFLLLLFRTVGVVLPIYFMVRAVALIQRHRRQHREHLNALAISSDDESEQADLQPQPQPHIIHLQEQH* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2482 274 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Vra8g2482 274 CDD RING_CH-C4HC3_MARCH 62 108 - -
Vra8g2482 274 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Vra8g2482 274 SUPERFAMILY RING/U-box 61 112 - -
Vra8g2482 274 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 266 IPR033275 -
Vra8g2482 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 116 IPR013083 -
Vra8g2482 274 PANTHER OS01G0121200 PROTEIN 1 266 - -
Vra8g2482 274 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Vra8g2482 274 SMART ringv_2 61 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2482 Vra-Chr8 42791619 42794820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2482 61 112 C3H Transcription Factor Family AT2G37950 45.455 1.63e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2482 - - vun:114190540 499.204