Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2459 ATGGATCCAGTGCCTGTTAATGTGTCTAATTCACATCCTATCAAAGATCCACCCACTTCTTCTCCTGCTAAAGAGCGTGATGGGCAAGCTTCTGCTGCTTCAGTTTCTGAGCAAGATAATTCAGCACATGAGACACCTTCTATGCCATCCCCACCAGGCATATCGTCTTGGGCCAAAAGCTTGAAAATTTCTCAGTCATTTTCTCGCTCCCAAGATGACTCATCAGGTGGAAATGTTGAGAAATCAACTTTTGCACGTTTCACTAGTAATCTGGGATTGAGGTTGTCTCCAAAGTCTCCTGTATCAGATGACAGTTCCAATGAAACTGCTGTACAATCTAATTTGTTTGGAAGCATTACGAAAGGCCTGGTTGACACTTCTAAGAATGCTGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCGCAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAGAACATCATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGATTTTTCGGATATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTAATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAGGTTTATAATCTTTGTTCTGAGCGGTTGTACGATGCATCGTTGTTTGAGGGGAAGGTGGCTAGCTTCCCTTTTGATGACCACAATTGCCCGCCAATTCAACTGATTATATCCTTCTGTCAAAGTGCTTACTCATGGTTGAAACAAGATATTGAGAATGTTGTGGTTGTCCACTGCAAGGCTGGAATGGCTAGGACAGGATTGATGATATCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCGATGGATTACTATAATCAAAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCGAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTAACTTACTTCAATGGCGAAAACCCTCCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCCGTAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCGCGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTCAGTGCACCAAAGAAGGGAGTGATGGTATTTGCTTTGCCAGGAGAGCCCGGTCTTACAGAGTTGTCTGGGGACTTCAAAATTCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAAATATGACCGAAAATAGAAAAGTATTGAACACTGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTTATGGTTGAGGTTGTGCTCCTGGACCATAATGCCAATGTAGTAACTTCGCAACCTAAAACTACTACAACGAAATCAGATGAGAGTTCAAGTAACAGTCCTACTGGTCCTGCGCCAGTGGAAAGGAGCACCCCTTCACAGAATGCAGTCAAAGAATCGGAGAGTCGCAATGATAAAGAAGATGATGTGTTTTCAGATGGCGAGGCAGAACAATCTGCTTCTTCAACAACCAAGCAAAAAAACGCACCTTCTGAAGCAGTTGAAACTGTTAAAAATGACACCAGAGGCTCCGACTCTGACAGAACTTCAAATGAAATTGCAAACTTATCGCATGCAACAGAACAAGTTTCTTTGGGAAACAAGAGCTCCTCCACGTCAATTCATCACGCTACTGAGCCAAGAAGTAATGTTGACGGTAAAACTGTGTCCAGTATCCAGGTGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGA 1878 0.4244 MDPVPVNVSNSHPIKDPPTSSPAKERDGQASAASVSEQDNSAHETPSMPSPPGISSWAKSLKISQSFSRSQDDSSGGNVEKSTFARFTSNLGLRLSPKSPVSDDSSNETAVQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSVTVSDHSGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGDFYCWLNTNMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLLDHNANVVTSQPKTTTTKSDESSSNSPTGPAPVERSTPSQNAVKESESRNDKEDDVFSDGEAEQSASSTTKQKNAPSEAVETVKNDTRGSDSDRTSNEIANLSHATEQVSLGNKSSSTSIHHATEPRSNVDGKTVSSIQVPSAESEFKAMAADASVFTFGDDEDYESD* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2459 625 MobiDBLite consensus disorder prediction 466 595 - -
Vra8g2459 625 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 18 625 - -
Vra8g2459 625 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 18 625 - -
Vra8g2459 625 MobiDBLite consensus disorder prediction 518 540 - -
Vra8g2459 625 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Vra8g2459 625 SMART PTEN_C2_2 331 459 IPR014020 -
Vra8g2459 625 MobiDBLite consensus disorder prediction 551 595 - -
Vra8g2459 625 MobiDBLite consensus disorder prediction 466 501 - -
Vra8g2459 625 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Vra8g2459 625 MobiDBLite consensus disorder prediction 1 59 - -
Vra8g2459 625 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Vra8g2459 625 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Vra8g2459 625 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Vra8g2459 625 MobiDBLite consensus disorder prediction 24 59 - -
Vra8g2459 625 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Vra8g2459 625 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2459 Vra-Chr8 42607575 42615397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2459 33 625 Protein tyrosine phosphatase (PTP) family AT3G19420 67.720 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2459 K01110 - gmx:100784003 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2459 8 42607575 42615397 Vra8g2459 8 42607575 42615397 ECH
Vra11g0555 11 4244675 4253882 Vra8g2459 8 42607575 42615397 PCT