Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2445 ATGGGTAGCCTTGAAGAGGAAAGAACAACTGTAGGATGGGCGGCAAGAGACCCTTCTGGGATTCTCTCCCCATACACCTACAATCTAAGAAACACTGGCCCTGATGATGTTTACATCAAAGTTCACTACTGTGGAATTTGCCACTCTGATCTCCACCAGATTAAAAACGATCTTGGCATGTCCAATTACCCCATGGTCCCCGGACACGAGGTAGTTGGTGAGGTACTGGAGGTGGGGTCAAACGTTAGCAGGTTCGGAGTTGGTGAAGTGGTTGGAGTTGGACTCCTCGTAGGTTGCTGCAAACACTGCGGACCATGCCAGTCAGACATTGAGCAGTACTGCAGCAAGAAAATTTGGTCTTACAATGATGTTTATGTGGATGGAAAGCCCACTCAGGGTGGCTTTGCAGAAACCATGATCGTCGAGCAAAAGTTTGTGGTGAAAATTCCAGAGGGTTTGGCGCCAGAGCAAGCTGCACCATTGTTGTGTGCTGGTGTGACTGTGTACAGTCCACTGTCGCATTTTGGGTTGAAAGAGAGAGGGCTGAGAGGTGGAATATTGGGGCTTGGAGGAGTGGGACACATGGGGGTGAAGATAGCAAAAGCATTTGGTCACCATGTGACTGTGATAAGTTCTTCTGACAAGAAGAAACAGGAGGCACTTGAACATCTTGGAGCTGATCAATATCTTGTTAGCTCTGATGCCACTGCTATGCAGGAAGCTGCTGATTCACTCGACTACATCATTGACACTGTGCCTGTTGGTCATCCTCTTGAGCCTTATCTCTCCTTGCTCAAACTTGATGGCAAGTTGATCTTGATGGGGGTCATCAACACCCCTCTGCAATTTGTTAGCCCCATGGTCATGCTAGGGAGGAAATCAATAACTGGAAGTTTCATTGGGAGCATGAAGGAGACAGAGGAGATGTTGGAGTTCTGGAAAGAGAAGGAACTGAGCTCTATGATTGAAGTGGTGAACATGGATTACATTAACAAGGCTTTTGAAAGGTTGGAGAAGAACGATGTGAGATACAGGTTTGTTGTGGATGTTAAAGGGAGTAAACTTGAACAGTAA 1074 0.4683 MGSLEEERTTVGWAARDPSGILSPYTYNLRNTGPDDVYIKVHYCGICHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVSRFGVGEVVGVGLLVGCCKHCGPCQSDIEQYCSKKIWSYNDVYVDGKPTQGGFAETMIVEQKFVVKIPEGLAPEQAAPLLCAGVTVYSPLSHFGLKERGLRGGILGLGGVGHMGVKIAKAFGHHVTVISSSDKKKQEALEHLGADQYLVSSDATAMQEAADSLDYIIDTVPVGHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLGRKSITGSFIGSMKETEEMLEFWKEKELSSMIEVVNMDYINKAFERLEKNDVRYRFVVDVKGSKLEQ* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2445 357 Pfam Zinc-binding dehydrogenase 191 312 IPR013149 -
Vra8g2445 357 CDD CAD1 11 349 - -
Vra8g2445 357 PANTHER ALDEHYDE REDUCTASE 4 357 - -
Vra8g2445 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 318 IPR036291 -
Vra8g2445 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Vra8g2445 357 Gene3D - 164 320 - -
Vra8g2445 357 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 4 357 - -
Vra8g2445 357 SUPERFAMILY GroES-like 16 181 IPR011032 -
Vra8g2445 357 Pfam Alcohol dehydrogenase GroES-like domain 34 149 IPR013154 -
Vra8g2445 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Vra8g2445 357 Gene3D - 13 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2445 Vra-Chr8 42479076 42480966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2445 1 355 Monolignol Biosynthesis Gene Families AT3G19450 79.213 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2445 K00083 - gmx:100777558 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2445 8 42479076 42480966 Vra8g2445 8 42479076 42480966 ECH