Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2439 ATGAGCCTTAATTCTCAGAATCTCCATTTGTTGTGGAGGCTCTCATCTTTTCTTCTTCTACTTCTTCAATCTGCTACATCTCAGTCAGTTATATCTCTTAACTCTGATGGGATTCTCCTGCTAAAATTCAAATACTCCATCCTCAGCGACCCTTTGTCAGTCCTAGAAAGTTGGAACTACGATGATGCAACACCATGTTCATGGTATGGTGTTACGTGCGACCAAATTGGAGCCCCCGGTACCCCTGATTTGTTCAGAGTAACCAGTTTGACACTTCCCAATAGCCAACTTTTGGGTTCCATTTCTGAGGACTTGGGCTTGATCCAATACCTTCGCCACATCGATCTCTCCAACAATTTCCTTAATGGCTCTCTACCCAACACTATCTTCAACTCTTCTCAGCTTCAAGTACTTTCTCTCTCAAACAATGTTATCTCGGGCCAACTAAATCAGCTGGTTGGAAAACTAACAAACCTTAAAGTTCTCAATCTCTCTGATAATGCCTTTGCCGGGTTGATCCCAGAAAACCTCACTACTCTACCAAACTTAACCGTTGTTTCTCTCAAGAGTAACTACTTCTCTGGTAGTGTCCCAACCGGGTTCAAGTACGTGCAGATTCTGGATCTGTCCTCCAATTTGTTAAACGGTTCTTTGCCAGAAGACTTTGGCGGCGAAAGCTTACGCTACATGAACCTCTCTTACAACAAGATTTCGGGAACAATTCCTCCAACATTCGCCAAAAAGATTCCTGGAAACTCAACGGTGGACCTCTCGTTCAATAATCTGACAGGGCCGATACCAGAGTCTTTGGCTTTGCTCAACGAGAAGACAGAGTTCCTATCAGGAAATGCTGATCTCTGTGGTAAGCCTCTTAAGATTATGTGCACAGTTCCCTCTACTGAGTCCACTGCTCCGCCCAACGTCACCACCTCTTCACCAGCCATTGCTGCCATACCGAAAATTGACTCAAACCCTTCAACAAACACAACAGGAACCCCCACCAGTTCTCAGAATATATCACCAAGTGGCCTAAAACCTGCCACCATAGCAGCAATTGTGGTGGGAGACTTGGCTGGCATGGCCCTTTTGGCCCTCGTCATTCTCTTGGTCTACCAACAGAGAAAGAAACGATATTCGGATCCAAATCCAAATTCAAAACGAGACACCAATGCTGCTTCTGGCAACAACTCAGAAAAGAAATACGAAACTGTTTCACGACAAGATGCAGATGCAAAAACAGTAACTCCTTCACTTCCTTGTTCCTGCTTAACAATCAAAGAAGAAGAAACCTCAGAGGCAACTAGCTCCGACAGTGACCGCGAGAGCAACACCGCAGTGGACATCATGGCAGCACAAAACGGGAACCTTCCGAAACAAGGCACTCTTGTAACCGTTGACGGGGAAACAGATTTGGAGCTTGAGACTCTGCTTAAGGCTTCAGCGTATGTTCTGGGAAACAGCCGCGTCAGCATTGTCTACAAGGCAGTGCTAGAGGATGGGAGAGCCTTTGCCGTTAGAAGGATCGGTGAGTGTGGGATTGAGAGAAGGAAGGACTTTGAGAACCAAGTGCGTGCCATTGCAAAGCTTCGCCATCCCAATTTGGTTAAGGTTCGCGGCTTCTGCTGGGGTCGAGATGATAAACTCCTAATATGTGACTACGTCCCCAATGGCAGCCTCGCCACCATTGATCACAGAAAATCAGGTTCGTCCCCTCTGAACTTGTCCCTGGAGGCACGGTTGAAGATAGCAAAAGGGGTGGCACGAGGGTTGGTCTTCCTTCACGAGAAGAAGCACGTGCATGGCAATGTTAAACCTGGCAACATTCTGCTAAACTCGGAAATGGAAGCCATCATAAGCGATTTTGGGCTGGACCGGCTCCTCCTGAACGATGTGACCCACAGAGCAAACGGTTCGGCTAGACAACTAATGGCGAGCCAAAGAAGCCAGCAAGATCAGGCATTTGGTTCAAGTCCTTTCGCAGCAATGGGATCATCGTCGAGTGGTGCGGGCCACATAATGCCCTATCAAGCCCCAGAGTCACTTGAGAACATCAAACCCAGTCACAAATGGGACGTGTACTCTTTTGGAATGGTGTTGCTGGAGCTTCTAACTGGGAGGGTTTTCCTGGAGCGGGAGTTGGAGCAGTGGAACGAACCGGGTTTAGTGGAGGAGGAGCAGAACCGGGTTTTGAGAATGGCTGACGTAGCAATAAAATCTGAAATAGAAGGGAGGGAGAACGTGGTAGTGGCATGGTTCAAGTTGGGGCTTAGCTGTGTCTCTCATGCCCCACAAAAGAGACCCTCCATGAAAGAGATTCTACAAATCTTAGATAAGATCCATGCTGCTGCTCCACTCAATTAA 2361 0.474 MSLNSQNLHLLWRLSSFLLLLLQSATSQSVISLNSDGILLLKFKYSILSDPLSVLESWNYDDATPCSWYGVTCDQIGAPGTPDLFRVTSLTLPNSQLLGSISEDLGLIQYLRHIDLSNNFLNGSLPNTIFNSSQLQVLSLSNNVISGQLNQLVGKLTNLKVLNLSDNAFAGLIPENLTTLPNLTVVSLKSNYFSGSVPTGFKYVQILDLSSNLLNGSLPEDFGGESLRYMNLSYNKISGTIPPTFAKKIPGNSTVDLSFNNLTGPIPESLALLNEKTEFLSGNADLCGKPLKIMCTVPSTESTAPPNVTTSSPAIAAIPKIDSNPSTNTTGTPTSSQNISPSGLKPATIAAIVVGDLAGMALLALVILLVYQQRKKRYSDPNPNSKRDTNAASGNNSEKKYETVSRQDADAKTVTPSLPCSCLTIKEEETSEATSSDSDRESNTAVDIMAAQNGNLPKQGTLVTVDGETDLELETLLKASAYVLGNSRVSIVYKAVLEDGRAFAVRRIGECGIERRKDFENQVRAIAKLRHPNLVKVRGFCWGRDDKLLICDYVPNGSLATIDHRKSGSSPLNLSLEARLKIAKGVARGLVFLHEKKHVHGNVKPGNILLNSEMEAIISDFGLDRLLLNDVTHRANGSARQLMASQRSQQDQAFGSSPFAAMGSSSSGAGHIMPYQAPESLENIKPSHKWDVYSFGMVLLELLTGRVFLERELEQWNEPGLVEEEQNRVLRMADVAIKSEIEGRENVVVAWFKLGLSCVSHAPQKRPSMKEILQILDKIHAAAPLN* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2439 786 Pfam Leucine Rich Repeat 111 129 IPR001611 GO:0005515
Vra8g2439 786 Gene3D Transferase(Phosphotransferase) domain 1 554 784 - -
Vra8g2439 786 ProSiteProfiles Protein kinase domain profile. 478 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2439 786 Gene3D Ribonuclease Inhibitor 203 297 IPR032675 -
Vra8g2439 786 Gene3D Ribonuclease Inhibitor 33 202 IPR032675 -
Vra8g2439 786 PANTHER OS04G0122200 PROTEIN 27 780 - -
Vra8g2439 786 MobiDBLite consensus disorder prediction 300 342 - -
Vra8g2439 786 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vra8g2439 786 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 27 780 - -
Vra8g2439 786 SUPERFAMILY Protein kinase-like (PK-like) 483 776 IPR011009 -
Vra8g2439 786 MobiDBLite consensus disorder prediction 384 400 - -
Vra8g2439 786 MobiDBLite consensus disorder prediction 376 414 - -
Vra8g2439 786 CDD STKc_IRAK 484 779 - -
Vra8g2439 786 Pfam Protein kinase domain 484 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2439 786 Gene3D Phosphorylase Kinase; domain 1 455 553 - -
Vra8g2439 786 SUPERFAMILY L domain-like 39 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2439 Vra-Chr8 42445033 42448270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2439 14 780 Receptor kinase-like Gene Family AT4G37250 49.292 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra8g2439 Pkinase 1.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2439 - - gmx:100820334 1241.48