Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2431 ATGGACCCCAAGGACGAATTTGAACTCACAGGGACCACTTTCTCTCAGTTACTATTCGGAGATGACCTTGATGCAACAACACCTGCATTGCCTCTCCCTCACCACCACTGCTCTTACGATCACCACTCCCTCTCCTCTTCCCCTCTTTTCTCCTTTCACAAGCCACCCAAAATGCTATGCTTTGGAGACCATGAAACCATACCCCACATTCCTCCCACCATCGTCACCCCTCAGAAATCTGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACTACACCAACACCGCCTTCACTTCCCTCCCCAAGTCCACTAGTTTGCAGAAAAAGCGGAATGGGTTGGGACAAGAATCAGTCACCAAGGTGGGTGTTGGAGGCCAGAGACAAACTAAAAAGACCAAAGCAGAGAATCCCACCTCAACCGGACATGCAAAGAGGAAGGAGAAGCTTGGGGAAAGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGATATATAAGGTTTCTTCACGACCAAGTTGAGGTCCTGTGCTCTCCTTACTTGCAAAGCTTGTCATCGTCACACCACGAACACCAGCACGGTGAAGAAGGAGAAAAGAAGAAAGAGGAAGTGAAGAAGGACTTGAGGAGTAGGGGTCTGTGCTTGATCCCAGTGGGATGCACCGTACACGTGGCGAGTAGCAACGGTGCTGATTTTTGGTCAGCTGGTGCAATAGGGAACAAAGTTTCACCATCAGGGAAGAAGTAG 795 0.4994 MDPKDEFELTGTTFSQLLFGDDLDATTPALPLPHHHCSYDHHSLSSSPLFSFHKPPKMLCFGDHETIPHIPPTIVTPQKSVITSSDSSSASSSNYTNTAFTSLPKSTSLQKKRNGLGQESVTKVGVGGQRQTKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVEVLCSPYLQSLSSSHHEHQHGEEGEKKKEEVKKDLRSRGLCLIPVGCTVHVASSNGADFWSAGAIGNKVSPSGKK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2431 264 CDD bHLH_AtbHLH_like 147 192 IPR045239 -
Vra8g2431 264 MobiDBLite consensus disorder prediction 79 150 - -
Vra8g2431 264 MobiDBLite consensus disorder prediction 124 139 - -
Vra8g2431 264 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 54 244 - -
Vra8g2431 264 Gene3D - 129 225 IPR036638 GO:0046983
Vra8g2431 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Vra8g2431 264 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 244 - -
Vra8g2431 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 197 IPR036638 GO:0046983
Vra8g2431 264 MobiDBLite consensus disorder prediction 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2431 Vra-Chr8 42380063 42382675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2431 121 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 51.145 6.68e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2431 - - gmx:100809317 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2431 8 42380063 42382675 Vra8g2431 8 42380063 42382675 ECH