Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2425 ATGAAATCCACGAAGATCCAGTACCCGCCGCTGTTTGTTTGGTGGCCCATATTTGGAGGAGTAAGAAATATAAACGAAGCACCGTTTTTTTCTCACTTTGGCGCTGAGATTGAGAAAAGGGAACTCTCACGAAACTCAACTCTCTCTTTCTCTCTCTCTCTCTCTCCTTCACCCTCTTCTCTCTGCAGCCAATCCCCATTTCAGATCGAGCCCTTCTTCTTCCTCCACCCTTTCCCATTCGCTGTGGTGACTGCTCTCTCTTCTTCACCACCAAGATTACTTGACTCACATTTAGACTATAGTGGTGGATGCTGTGGTGTGTGGTTTTTCCTCAGACCTATGACTAGTCCATTTGGAGAATTGACAAGCAATAACAGTGCCGCTGGAAGGATGAGTACTGAACAATCTGAATTGTCTGAAAAAACACAGTTAGGGACTGAGCAGTTACTAAAGGAACAACGGGAGTCTGGTACTGTTTTAACCAGTTCAGTTATCGATGAAATATCAAATCAAGTTTTTGCTAATGCGACAGAGAATTCTGTTATTTTACTGCCTGCACCACCTCAACATGACTCAGAAAAGAATTGTCAGAATGTAGAAGGTTCACACCTGCAACAAAGTACCGATAAAGAAGTCTCTTTACAGTTATCTAACGACAAGCCAGAAAACCCATCCCAACCATTGTCTGAAAATGAACCTGTGGAATCCGTTTCTGCCTCTGCTGGGGATGGCCAAAAGCAATCTAGTCCAGCTCAAGCGAATACAAGTTATGTGAATAAATTGTTGGATCCACCTAATGAAGACGCTGTGACCAATTTTTCAGAAAAAGTGTCTAATAGCCCCGCTAATTCGCAATCGAGGCGCAAGGGTAAAAAAAACTCAAAATTGTTGAAGAAGACATATATGCTACGATCAATAGGAAGCAGTGACAGAGCTTTGCGGTCAAAAACAAAAGAAAATCCCAAGACACCTGAACCAAGTAGTAATTTGGTTGATTTTAATAATAATAATAGCAATGCTGGAGGGAAGAGGAAAACTAGTAGGAAGAAGAGAAAGAGTGGAGAGGTTGGAATCACTGATCAATTCTCCAGAATCAAATCTCACTTAAGATATTTATTAAACAGAATAAGCTACGAGAAAAGCTTGATTGATGCTTATTCTGGCGAAGGCTGGAAAGGATACAGTATGGAAAAATTGAAGCCTGAGAAAGAACTTCAACGGGCCAAGTCTGAAATTCTTCGACGCAAATTGAACATTAGGAATCTATTTCGAGATTTGGATTCATTGTGTGCTGAAGGAAAGCTGCCAGAATCTTTATTTGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCATTCCAAAGAGTTGAGTTCTAATAATGATATAATTCTCTGTGATGGTGTCTGTGACCGCGGCTTTCACCAGCTCTGTTTGTTTCCTCCGTTGTTAACTGAAGACATTCCACCTGATGATGAGGGTTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATGGACCTTATTAATGACTCCTTTGGAACAAGTCTCTCTATTAGCGACACCTGGGAGAGCGTTTTTCCTGAAGCAGCAGCAGCTGCTGGGAATAATATGGATAACAACTTGGGACTCCCTTCTGATGATTCTGATGATGATGATTATAACCCTAATGGTCCAGAGGATTTGAAAATTGAAGGAGATGAATCAAGTTCTGAGGAATCTGACTATGCTTCTGCTTCTGAGAATTTGGAGGGTTCACATGGGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGATCCTGATGCTCCAGATGTTGACAATAAGGTCAATGAAGAAAGTTCAAGCTCTGATTTCACGTCTGACTCCGAGGATCTTGCTGCTGCAATTGTGGATAATGCATCCCCTGGACAGGATGAGGAAATCAGATCTGCATCATTGGATGATGTTAAGCACTTGAGAAGTTATGGCAAAAAAAAGGGTAAAGCTGGTAAGAAGCTATCTATGGCTGATGAACTGTCGTCTTTACTAGAGCCAGATTCTGGTGGAGAAGGTTCTATACATGTTTCTGGGAAAAGGAATTTGGAAAGGTTGGACTACAAAAAGTTGTATGATGAGACATACCATAGCGATACTAGTGAAGATGAAGATTGGACAGCCACTGTTACTCCTAGCAGAAAGAAGAAAGGCAATGCGACTCCTGTGTCTCCAAATGGAAATGCTTCAAATAATTCCATGCACACTCCTAAGAGGAATGGCCATCAGAATAAATTTGAAAATACAAAAAATTCACCTGCCAAATCACATGGCGATGTGAAATTTGATTCCAGGGAACAAACGTCTAGATCTCCAGGAGGCCATAGACTAGGAGAAGCAGTAGTTCAGAGACTTCACATATCTTTTAAAGAAAATCAGTATCCAGATAGAGCTACTAAAGAAAACTTGGCACAGGAACTTGGACTTACTTATCAGCAGGTTGGCAAATGGTTTGACAATACACGGTGGAGCTTCCGGCACTCATCAAAAACCAATTCAGGTAGAAATACATTACGGAAAGCTGCTGATAGCAGAGCTGAAAATGAAGGGGGTGAATGTGAGTTAGTGTCCCCGGAGGTCAGCGGAGAAAAAGCAAAAGCCCCAAGCTCTGGAAAAAGAAAGCATTTGTCAGAACACCAACTATCTGAAGACAAAGCTCATCAAACCCAAAGGGGGAAGAAAATGAAGACAAGGAGAAGGAAATGA 2772 0.4163 MKSTKIQYPPLFVWWPIFGGVRNINEAPFFSHFGAEIEKRELSRNSTLSFSLSLSPSPSSLCSQSPFQIEPFFFLHPFPFAVVTALSSSPPRLLDSHLDYSGGCCGVWFFLRPMTSPFGELTSNNSAAGRMSTEQSELSEKTQLGTEQLLKEQRESGTVLTSSVIDEISNQVFANATENSVILLPAPPQHDSEKNCQNVEGSHLQQSTDKEVSLQLSNDKPENPSQPLSENEPVESVSASAGDGQKQSSPAQANTSYVNKLLDPPNEDAVTNFSEKVSNSPANSQSRRKGKKNSKLLKKTYMLRSIGSSDRALRSKTKENPKTPEPSSNLVDFNNNNSNAGGKRKTSRKKRKSGEVGITDQFSRIKSHLRYLLNRISYEKSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLNIRNLFRDLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCHSKELSSNNDIILCDGVCDRGFHQLCLFPPLLTEDIPPDDEGWLCPGCDCKDDCMDLINDSFGTSLSISDTWESVFPEAAAAAGNNMDNNLGLPSDDSDDDDYNPNGPEDLKIEGDESSSEESDYASASENLEGSHGDQYLGLPSEDSDDGDYDPDAPDVDNKVNEESSSSDFTSDSEDLAAAIVDNASPGQDEEIRSASLDDVKHLRSYGKKKGKAGKKLSMADELSSLLEPDSGGEGSIHVSGKRNLERLDYKKLYDETYHSDTSEDEDWTATVTPSRKKKGNATPVSPNGNASNNSMHTPKRNGHQNKFENTKNSPAKSHGDVKFDSREQTSRSPGGHRLGEAVVQRLHISFKENQYPDRATKENLAQELGLTYQQVGKWFDNTRWSFRHSSKTNSGRNTLRKAADSRAENEGGECELVSPEVSGEKAKAPSSGKRKHLSEHQLSEDKAHQTQRGKKMKTRRRK* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2425 923 PANTHER HOMEOBOX PROTEIN HAT3.1 241 899 - -
Vra8g2425 923 CDD homeodomain 797 851 IPR001356 GO:0003677
Vra8g2425 923 SUPERFAMILY FYVE/PHD zinc finger 442 510 IPR011011 -
Vra8g2425 923 MobiDBLite consensus disorder prediction 700 733 - -
Vra8g2425 923 SUPERFAMILY Homeodomain-like 798 853 IPR009057 -
Vra8g2425 923 MobiDBLite consensus disorder prediction 774 794 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 271 287 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 322 342 - -
Vra8g2425 923 SMART HOX_1 791 854 IPR001356 GO:0003677
Vra8g2425 923 MobiDBLite consensus disorder prediction 191 261 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 847 923 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 123 143 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 185 356 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 734 761 - -
Vra8g2425 923 Pfam Homeodomain 803 846 IPR001356 GO:0003677
Vra8g2425 923 SMART PHD_3 452 505 IPR001965 -
Vra8g2425 923 ProSiteProfiles Zinc finger PHD-type profile. 450 507 IPR019787 -
Vra8g2425 923 MobiDBLite consensus disorder prediction 888 912 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 542 635 - -
Vra8g2425 923 MobiDBLite consensus disorder prediction 847 861 - -
Vra8g2425 923 ProSitePatterns Zinc finger PHD-type signature. 453 504 IPR019786 -
Vra8g2425 923 CDD PHD_PRHA_like 452 504 IPR045876 -
Vra8g2425 923 MobiDBLite consensus disorder prediction 686 801 - -
Vra8g2425 923 ProSiteProfiles 'Homeobox' domain profile. 804 850 IPR001356 GO:0003677
Vra8g2425 923 Gene3D - 796 861 - -
Vra8g2425 923 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 509 IPR013083 -
Vra8g2425 923 Pfam PHD-finger 452 507 IPR019787 -
Vra8g2425 923 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 241 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2425 Vra-Chr8 42342123 42349916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2425 306 847 Homeobox Transcription Factor Family AT3G19510 45.486 3.79e-132 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vra8g2425 PHD 4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2425 - - pvu:PHAVU_007G041800g 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2425 8 42342123 42349916 Vra8g2425 8 42342123 42349916 ECH