Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2424 ATGACTTCTTCTTGCCCAGGAATTGATCCTCTTCCCCATGAGTTCCGCTTCTTCAAGATTATCGTGGATACTACTCTTCAAGAGGGAAAGATTATGATTCCAAAGGAGTTCACTCGGAAATATGGTGGTAGATTGTTAAACCCTCTGTTTCTCAAGGTTCCCGATGGCATTGAATGGGAACTATGTTGGACTAAAGACAGTACTGGTAATGTTTGGTTGGAAAAGGGATGGAAGGAATTCGCCACTTATTACTCCCTTGGCTACGGCCATCTTGTGACGTTCACATACCAACAAACATGTACATTAGAGGTACACATATACAATACAAGTGCCGTACAAATAAATTATCCCTCCAACAGTACTCAAAACAGTTCTAGTAATGTTTTGTTTGGGGTAGCTCCAACATCACCATCTCTTCCTAGGCCTTCTAAGAAACCAAGGACACACCCAAGTAGAGTTGTTGGGCAAAGGTCCGGTTTACCTCAGCATGTCCAAGTTAAAGCTGATCTGCTTCAAGAGAATAGTGGTGCAACCAGATCTGAAACTCCTTCTTTTATGGTTACCCTGAAGGAAACAAACGTGCATGGATATATTCTGGTCATTCCGTCCATCTTTACTAAAAAGTATTTGAAGGAAACCGGCAAACAAGATATTCTCCTCCAAGTCTTGGATGGGAGAACTTGGCACGTTACATTGAAGAATGGCAAATTTTTCAAGGGATGGAGGACTTTTGTATCACATAACTATTTGAATGTTGGAGATGTTTGCATTTTTGAGCTAACCGAGAGCAAAGCTCCATGTTTTAAAGTGTCGATAATTCCAATTTCACAAGATAAATGTTCGAGTTCACAAGATAGAGAATATGTTGACTTTACGAAAATCCAAGACTTGAGATGTATTAATACTTTTTCCATCAAAGCTATGCAAGAAGCAGCAAATTTCACGTCCGTAAATCCTTTTTTCACGCTCAATATAAGGGCAAATCATAGGGGAGATTTCAGACCGCGTGTACCACTTGATTTTGTGGAAAAGTACTTCCACAAGAAACAGGTTGTGACGTTACAGTTTGGGAATAAATCATGGCGGGTAAACCGGGTTGGTGCTGTTCCAACAAAGCTGTCTCAAGGTTGGAGCTCATTTGCAAAAGAATGA 1152 0.4054 MTSSCPGIDPLPHEFRFFKIIVDTTLQEGKIMIPKEFTRKYGGRLLNPLFLKVPDGIEWELCWTKDSTGNVWLEKGWKEFATYYSLGYGHLVTFTYQQTCTLEVHIYNTSAVQINYPSNSTQNSSSNVLFGVAPTSPSLPRPSKKPRTHPSRVVGQRSGLPQHVQVKADLLQENSGATRSETPSFMVTLKETNVHGYILVIPSIFTKKYLKETGKQDILLQVLDGRTWHVTLKNGKFFKGWRTFVSHNYLNVGDVCIFELTESKAPCFKVSIIPISQDKCSSSQDREYVDFTKIQDLRCINTFSIKAMQEAANFTSVNPFFTLNIRANHRGDFRPRVPLDFVEKYFHKKQVVTLQFGNKSWRVNRVGAVPTKLSQGWSSFAKE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2424 383 MobiDBLite consensus disorder prediction 134 156 - -
Vra8g2424 383 PANTHER B3 DOMAIN-CONTAINING 304 383 - -
Vra8g2424 383 PANTHER B3 DOMAIN-CONTAINING 14 273 - -
Vra8g2424 383 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 273 - -
Vra8g2424 383 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 304 383 - -
Vra8g2424 383 CDD B3_DNA 15 108 IPR003340 GO:0003677
Vra8g2424 383 Gene3D - 303 383 IPR015300 -
Vra8g2424 383 Gene3D - 166 276 IPR015300 -
Vra8g2424 383 SMART B3_2 17 110 IPR003340 GO:0003677
Vra8g2424 383 SMART B3_2 185 276 IPR003340 GO:0003677
Vra8g2424 383 ProSiteProfiles B3 DNA-binding domain profile. 184 276 IPR003340 GO:0003677
Vra8g2424 383 SUPERFAMILY DNA-binding pseudobarrel domain 179 274 IPR015300 -
Vra8g2424 383 ProSiteProfiles B3 DNA-binding domain profile. 16 110 IPR003340 GO:0003677
Vra8g2424 383 Gene3D - 12 111 IPR015300 -
Vra8g2424 383 SUPERFAMILY DNA-binding pseudobarrel domain 15 110 IPR015300 -
Vra8g2424 383 CDD B3_DNA 183 274 IPR003340 GO:0003677
Vra8g2424 383 Pfam B3 DNA binding domain 188 269 IPR003340 GO:0003677
Vra8g2424 383 Pfam B3 DNA binding domain 24 108 IPR003340 GO:0003677
Vra8g2424 383 SUPERFAMILY DNA-binding pseudobarrel domain 318 383 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2424 Vra-Chr8 42333588 42338762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2424 11 277 B3 DNA Binding Superfamily AT3G18990 24.277 1.07e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra8g2424 B3 5.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2424 - - var:108325311 698.738