Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2415 ATGCTGCGTCTGTGCTACGGTCCTCTCGATTGCTGCTTCCGACGCCGTGGTGGCCGCGCCGCCGACGGACTACTCTGGCATACAGACTTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCACAGGCCAATTACAGTCTCGAGGATCAGAGCCAAGTCTTCACCTCCCCCTCCGCTACCTACGTCGGCGTCTACGACGGTCACGGCGGCCCCGAAGCTTCTAGATTCGTCAACAAACGACTCTTCCCTTATTTACACAAATTTGCCACTGAGCAAGGGGGTTTGTCTGTGGATGTGATAAAAAAGGCATTTAGTGCCACAGAGGAGGAATTCCTGCACTTGGTGAAGCTTTCCTTGCCCATTAGTCCTCAGATTGCTTCTGTGGGGTCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTACGTTGCTAACCTCGGAGACTCTAGAGCTGTTCTTGGAAGGAGGGATGTCCAGAGAAAGAACAGTCCAGTGGTGGCACAGCGCTTGTCAACTGATCATAATGTAGCTGATGCGGAGGTGAGAAGAGAAGTTGAAGCTCTCCATCCTGATGACTCACACATAGTGGTTTATAGCCGAGGAGTTTGGAGGATAAAGGGCATTATTCAGGTTTCAAGATCTATTGGTGATGTGTATTTAAAGAAACCTGATTTCTACCGAGACCCTGCTTTTCAGCAATTTGGAAATCCTATTCCTTTGAAGCGTCCCGTGATGACAGCTGAACCTTCGATCATTATCAGGGAGCTTGAGTCGGAGGATTTATTCTTGATATTTGCTTCCGATGGACTGTGGGAACAATTAAGTGACGAAGCAGCAGTTCAGATTGTTTTCAAGTATCCAAGAGCTGGAATTGCCAAGAGACTGGTGAGAGCCGCTCTTCAAGAAGCTGCAAAGAAGAGAGAGATGAGATATGATGACATAAAAAAAATCGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTGATTGTAATCTATCTTGATCACCATGCGGGATCCTCTAATGGTAGATTCAAGCAAACTGCTGTTGGCTATACAACTGCACCTGTTGATATTTTTTCCCAAAATGCGGACGAAGCAGAAAAGAGAATGCTTGGTGCAATTGCCTGA 1146 0.4738 MLRLCYGPLDCCFRRRGGRAADGLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDVQRKNSPVVAQRLSTDHNVADAEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKKPDFYRDPAFQQFGNPIPLKRPVMTAEPSIIIRELESEDLFLIFASDGLWEQLSDEAAVQIVFKYPRAGIAKRLVRAALQEAAKKREMRYDDIKKIDKGIRRHFHDDITVIVIYLDHHAGSSNGRFKQTAVGYTTAPVDIFSQNADEAEKRMLGAIA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2415 381 CDD PP2Cc 50 339 IPR001932 -
Vra8g2415 381 Gene3D - 28 348 IPR036457 -
Vra8g2415 381 Pfam Protein phosphatase 2C 58 308 IPR001932 -
Vra8g2415 381 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Vra8g2415 381 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 376 - -
Vra8g2415 381 PANTHER ALPHABET, ISOFORM E-RELATED 4 376 - -
Vra8g2415 381 SUPERFAMILY PP2C-like 46 341 IPR036457 -
Vra8g2415 381 SMART PP2C_4 31 337 IPR001932 -
Vra8g2415 381 ProSiteProfiles PPM-type phosphatase domain profile. 37 339 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2415 Vra-Chr8 42273775 42276966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2415 22 346 PP2C-type Phosphatase Gene Family AT3G51370 57.658 1.60e-140 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2415 - K01102 gmx:100812137 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2415 8 42273775 42276966 Vra8g2415 8 42273775 42276966 ECH
Vra11g0535 11 4085090 4087699 Vra8g2415 8 42273775 42276966 PCT