Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2414 ATGACGAGCGCTTCGGAGCTATTTCACACCAGAAGGCATCGATTGGGACGAAGTTCTATCGATCTAGGGTTCGACACAGAACTCCAAGCCGCCGATTCTTTCCGCCGTCGCCAACACGTCCGCCGCCTCCGTCACCACCCGGAGCGTGCATCTGATAGAGTCGGTGGGAGGTATCGACGGTCTTTTGTAAATGATAGCGTTGATTCCGAAGAAAACGTAAGAGGCAGTCTTGGAGGGAGTAACAGTGAGAGGCTACCCGTGGGTGTGGTTCTTGCACGGGCCAGACTCCTTCAGAGGTTGAGAGGGGAACCTCTGTCTAGAAACAGGCAATATGGTATAGATTCATTGGGTGAGGATCGGGAAAGTGAATCATCAAATGAAGTTGCAACTCAGGCCACTCTAGTTACTGACTTGACTTCACAGATGGGAAGGTCCCAGTTCTTGCAGGAGCTACACAAAAAGCCACCAGGGCTTACTCAGGAGGCCTTGGACTGTTTGGATCAGGAAGTTTTTAGCAGCAGCGAGACAGGATTGGATTCCAGGGTAATGCAGGACTGTAGTATATGCTTGGAAACTTTCACGGATGGAGATGAGCTGATACGTCTGCCATGTGGACATAAATTCCATTCTGTTTGCTTGGATCCATGGATTCGCTGCTGTGGAGACTGCCCATATTGTCGAAGACGTGTAGTTCTAAATACTCACTTACCACAATACGACCATGAGTAA 729 0.4966 MTSASELFHTRRHRLGRSSIDLGFDTELQAADSFRRRQHVRRLRHHPERASDRVGGRYRRSFVNDSVDSEENVRGSLGGSNSERLPVGVVLARARLLQRLRGEPLSRNRQYGIDSLGEDRESESSNEVATQATLVTDLTSQMGRSQFLQELHKKPPGLTQEALDCLDQEVFSSSETGLDSRVMQDCSICLETFTDGDELIRLPCGHKFHSVCLDPWIRCCGDCPYCRRRVVLNTHLPQYDHE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2414 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 231 IPR013083 -
Vra8g2414 242 SMART ring_2 186 226 IPR001841 -
Vra8g2414 242 Pfam Ring finger domain 185 227 IPR001841 -
Vra8g2414 242 CDD RING-H2_PA-TM-RING 185 227 - -
Vra8g2414 242 SUPERFAMILY RING/U-box 185 236 - -
Vra8g2414 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 232 - -
Vra8g2414 242 PANTHER SI:CH211-59O9.10 1 232 - -
Vra8g2414 242 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2414 Vra-Chr8 42265646 42267997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2414 1 231 C3H Transcription Factor Family AT1G49850 42.248 3.85e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2414 - - gmx:100814695 379.022