Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2411 ATGGGTGATGCACTAAATGAAGTGCAGCACAGGGGTGGTGTACCGGCTTCTTCTCCCAAGAGGGACATTTCATTGTTTGAAGGAGACAAGGATTTTGAGCCGCACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTTATTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGCTCGAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACGCCTGAGTCTGACAGTGGCAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCACGTGAAGAGAAAGCCAGATGGAAAATGGATCATTCACGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATCTTGAATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCAAGGCAATCTGGAGGCTGTCAAAACATCGGGTCTTTTGTGAGTGATATAAACTATCAGTTTGACAGAGGCCAGTATTTGGCTTTGGAAGAGGGAGATGCCCAAATTATGCTTGAGTATTTTAAGCATGTGCAAAAGGAGAGTCCCAACTTCTTCTATTCTATAGATTTAAATGAAGAACAGCGGTTAAGAAATCTATTTTGGATTGATGCAAAAAGTATCAATGATTATCACAGCTTTAATGATGTAGTTTCATTTGATACCACTTACATAAAAAGCAATGACAAGTTGCCGTTTGCACCTTTTGTTGGAGTGAACCATCACTCCCAGCCTATTTTGCTTGGATGTGCATTGGTTGCTGATGAGAGTAAACCAACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCTATGGGTGGGCAAGCTCCCAAGGTTATAATCACTGATCAAGACAAAGCCTTGAAGGCAGCAATTGAAGAAGTCTTGCCGAATGTTCGTCATTGTTTTTCTCTTTGCCACATACTAGAGAGGATACCAGAAAATCTCTCTTTTGTGATCAAACAACACAACAACTTCTTACAAAAATTTAACAAGTGCATTTTTAAATCGACAGAGGATCAGTTTGACATGAGATGGTGGAAAATGGTCAGCATATATGAACTCCAAGATGATGTTTGGTTTCAGTCATTGTATGAGGACCGGAAAAAGTGGGTGCCGACTTACATGGGGGATACCTTTTTAGCTGGAATGTCTACACCTCAACGCTCTGAAAGTACGAGCTCTTTCTTTGACAAATATATTCATAAGAAAATTACTCTCAAGGAGTTTGTAAAACAGTATGGGATAATTCTGCAGAATAGGTATGATGAAGAAGCCATTGCGGATTTTGAATCATTGCACAAGCAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAGCAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTTCAAGTTGAAGTTCTGGGTGTAGCTGGTTGTCAATCTAGGATAGAGGTTGGAGATGGAACTCTTGCAAAGTTCATAGTTCAAGATTATGAGAAGAATGAAGAGTTTTTGGTAACTTGGAATGAAATGAGCTCAGAGGTCTCTTGCTTTTGTCGATTGTTTGAATATAAAGGTTTCCTCTGTAGGCATGCTTTGAGTGTTCTCCAACGTTGTGGTTGTTCAAGTGTTCCATCTCATTATATCTTGAAGAGGTGGACGAAAGATGCCAAAATTAAGGAATCAATGGCTGATAGGACAAGAAGGATACAAACTAGGGTGCAGCGTTATAATGACTTGTGTAAACGAGCCATCGATTTAAGTGAAGAAGGATCATTATCTGAAGAGAATTACAATGTTGTTTTCCGTGCACTTGTTGACGCCTTGAAGAACTGTGTACTGGTGAATAATTCTAATAACAATGGTGCAGAAACTAGCAATAATGCCTATGGCCTTCGTGAAGCAGAAGAAAATCAGGGTCCTCTCGCTTTGAAACCAAATAAAAAGAGGAACGCAGCTAGGAAAAGAAAGGCACAATTAGAGCAGGATGTTATACTTGTTAATGCTCAAGATAGCCTGCAGCAAATGGATAATCTCAGCTCGGATGCAATGACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGGTACAATTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCAACAGGGCATGCAAGGCCTGGGTCCTTTGAATTCCATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAGGAATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCATCAACTACTTTTGGATATAGCCTTCAGGATGAACCTGATCCCCAGTTTCATGGCAACAGTTCAAGAAATACTTAG 2424 0.3944 MGDALNEVQHRGGVPASSPKRDISLFEGDKDFEPHNGIEFESHEAAYLFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILNAVSERTRKMYVEMSRQSGGCQNIGSFVSDINYQFDRGQYLALEEGDAQIMLEYFKHVQKESPNFFYSIDLNEEQRLRNLFWIDAKSINDYHSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADESKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKAAIEEVLPNVRHCFSLCHILERIPENLSFVIKQHNNFLQKFNKCIFKSTEDQFDMRWWKMVSIYELQDDVWFQSLYEDRKKWVPTYMGDTFLAGMSTPQRSESTSSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFESLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRIEVGDGTLAKFIVQDYEKNEEFLVTWNEMSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYILKRWTKDAKIKESMADRTRRIQTRVQRYNDLCKRAIDLSEEGSLSEENYNVVFRALVDALKNCVLVNNSNNNGAETSNNAYGLREAEENQGPLALKPNKKRNAARKRKAQLEQDVILVNAQDSLQQMDNLSSDAMTLNGYYGTQQNVQGLVQLNLMEPPHDGYYVNQQGMQGLGPLNSMAPSHDGFFGTQQGIHGLGGQLEFRPSTTFGYSLQDEPDPQFHGNSSRNT* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2411 807 MobiDBLite consensus disorder prediction 786 807 - -
Vra8g2411 807 MobiDBLite consensus disorder prediction 1 24 - -
Vra8g2411 807 Pfam SWIM zinc finger 544 569 IPR007527 GO:0008270
Vra8g2411 807 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
Vra8g2411 807 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 722 IPR031052 GO:0006355
Vra8g2411 807 Pfam MULE transposase domain 255 348 IPR018289 -
Vra8g2411 807 SMART 26again6 545 572 IPR006564 GO:0008270
Vra8g2411 807 ProSiteProfiles Zinc finger SWIM-type profile. 534 570 IPR007527 GO:0008270
Vra8g2411 807 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 12 722 - -
Vra8g2411 807 Coils Coil 680 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2411 Vra-Chr8 42245495 42250581 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra8g2411 MULE 3.9e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2411 - - gmx:100805377 1504.96