Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2405 ATGGGACACTCCAACGTTTGGAACTCTCACCCCAAGAACTATGGTCCTGGTTCTCGTACTTGCCGTGTGTGTGGAAACCCACATGGATTGATCAGGAAGTATGGCCTTATGTGCTGCAGGCAGTGCTTCCGTAGCAATGCCAAGGAGATTGGCTTCATCAAGTATCGTTAA 171 0.4912 MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR* 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2405 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Vra8g2405 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 - -
Vra8g2405 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 IPR039744 GO:0003735|GO:0008270
Vra8g2405 56 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 49 - -
Vra8g2405 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2405 Vra-Chr8 42220812 42222058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2405 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.857 1.36e-34 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2405 K02980 - gmx:100817876 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0029 11 253251 254682 Vra8g2405 8 42220812 42222058 PCT