LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g2403	ATGGCATCTGCGGTTTCCCCCGCGACGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGCATAACCAATCTCCGATTCTCAAATCACAGCGACCATCTCTTGGTCTCCTCATGGGACAAGAGTGTGCGGCTGTATGATGCGAGCGCTAATGTGTTGAGAGGAGAGTTCATGCACGCTGGCCCTGTTCTCGATTGCTGCTTCCACGACGATTCCTCTGGTTTCAGTGCCGCAGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCCAATAAAGAGGATATTCTGGGTAGGCATGATGCACCTGTTCGTTGTGTTGAGTACTCGTATGCTGCAGGCCAACTGATCACTGGTAGTTGGGACAAAACGCTGAAATGCTGGGACCCTAGAGGCGCCAGTGGACAGGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCGTGTGTACTCTCTCTCACTGGTTGGACATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTCAATATCTATGACTTGAGGAACATGTCTCAACCTGAGCAAAAAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTTCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCTGTCGAGGGCCGGGTTGCAATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCGAAAAAATATGCTTTCAAGTGTCACAGAAAATCGGAAGCTGGAAGGGACATAGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGCACATTTGCCACGGGAGGTTGTGATGGTTATGTTAACGTATGGGACGGAAACAATAAAAAGAGGCTATACCAGTACTCTAAATATCCAACTAGCGTTGCCGCACTTTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACTTTCGAAGAAGGACCTAAAAGCAACGAATCGGATGCTATTTTCGTTCGTAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCGAATCCTCCAGCGTGA	1026	0.4844	MASAVSPATGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNPPA*	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g2403	341	Pfam	WD domain, G-beta repeat	19	46	IPR001680	GO:0005515
	Vra8g2403	341	Pfam	WD domain, G-beta repeat	95	127	IPR001680	GO:0005515
	Vra8g2403	341	Pfam	WD domain, G-beta repeat	229	270	IPR001680	GO:0005515
	Vra8g2403	341	PRINTS	G protein beta WD-40 repeat signature	33	47	IPR020472	-
	Vra8g2403	341	PRINTS	G protein beta WD-40 repeat signature	114	128	IPR020472	-
	Vra8g2403	341	PRINTS	G protein beta WD-40 repeat signature	257	271	IPR020472	-
	Vra8g2403	341	SUPERFAMILY	WD40 repeat-like	16	304	IPR036322	GO:0005515
	Vra8g2403	341	PANTHER	MITOTIC CHECKPOINT PROTEIN BUB3.2	5	336	-	-
	Vra8g2403	341	SMART	WD40_4	222	270	IPR001680	GO:0005515
	Vra8g2403	341	SMART	WD40_4	49	86	IPR001680	GO:0005515
	Vra8g2403	341	SMART	WD40_4	135	171	IPR001680	GO:0005515
	Vra8g2403	341	SMART	WD40_4	6	46	IPR001680	GO:0005515
	Vra8g2403	341	SMART	WD40_4	88	127	IPR001680	GO:0005515
	Vra8g2403	341	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vra8g2403	341	PANTHER	MRNA EXPORT FACTOR AND BUB3	5	336	-	-
	Vra8g2403	341	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	95	127	-	-
	Vra8g2403	341	Gene3D	-	3	335	IPR015943	GO:0005515
	Vra8g2403	341	ProSiteProfiles	Trp-Asp (WD) repeats profile.	95	127	IPR001680	GO:0005515
	Vra8g2403	341	ProSiteProfiles	Trp-Asp (WD) repeats profile.	245	279	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g2403	Vra-Chr8	42205191	42208779	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g2403	75	303	U-box Gene Family	AT2G33340	24.464	6.10e-07	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g2403	K02180		-	gmx:100808389	659.062