Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2401 ATGAGCTGCAATGGTTGTCGTGTTCTCAGAAAGGGTTGCAGTGAGAACTGCATGCTACGACATTGCCTACAATTGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTTGTGGCCAAGTTCTTTGGCCGTGCTGCTCTCATGTCGTTCCTTTCCGCCGTACCTGCCAACCAAAGATCCGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGTTGTTGTGGAGTGGGAACTGGCAGCTGTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGGTGGTGCTGCGTTCCTCAGTAGTGTAGATGTGCACCATCAACACCATGTAACTGAGAGAGTGATGATTGCAGGTGGAACATTGTGTCACCAGGCAAAGAAGCAACGTGTGGGGACAACCTCCCAGGAATCTGAGACCTTTTATATGGGACGTAAACCACAGGATTCTGCCCCTCAAAGTCAAAGGAACCTCCTTACACTATTCTTCTGA 519 0.501 MSCNGCRVLRKGCSENCMLRHCLQLIENPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQMGVEKVLRGGAAFLSSVDVHHQHHVTERVMIAGGTLCHQAKKQRVGTTSQESETFYMGRKPQDSAPQSQRNLLTLFF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2401 172 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Vra8g2401 172 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vra8g2401 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 172 - -
Vra8g2401 172 PANTHER LOB DOMAIN PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2401 Vra-Chr8 42196048 42198139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2401 1 106 AS2 family AT3G49940 78.302 1.57e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra8g2401 LOB 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2401 - - vra:106772384 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0521 11 3963017 3964367 Vra8g2401 8 42196048 42198139 PCT