Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2399 ATGGCTTTGGAGGCTTTGAATTCTCCAACAGCACCCGCCGCTCCCTTCCGTTCCTATCAAGAAGAGGAGGAGCTTGATCTTCAGTTCCGCGAGCCTTGGTCTAAAAGGAAACGATCCAAACGACCGCGTCTCGAGACCGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCGCAGGGCGGCAACAACACCAACACCAACACTTCCTCCCACCGCCAAACTCAACAATCAGAATCTCAGAAAGAACCGTCACCGCCGCTCAAGTTATCCCACAGGTGCACCGTTTGCAACAAGGCCTTTCCTTCTTATCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCGTCGGAATCTACCTCTGCCTCTGCCGTCGCCAGCGACAGCGTCACCGCTTCCACCGTCGGCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACCGGCCAGGCCCTTGGTGGCCACAAGCGCTGCCACTACGACGGTGGAAACCATCACAGTAACAGTAACGCCCTAACTTCCTCCTCCGATGGCGTTGGCGGCGGTGCTGCCTCCTCCCACACGCTCCGTGGGTTCGACCTGAACCTTCCGGCGCCCCTCACGGAGTTCTGGCCGCCGGTGGGGTTCGACTTCAGGAAGAAAGTCGGCGGAGGCGACGAGCAAGAGGTGGAAAGCCCGTTGCCAATAAACGCCGCCAAGAAGGCGCGTTTGTTTTCGGGCGATGACGATCAAACGGCGTAG 759 0.5876 MALEALNSPTAPAAPFRSYQEEEELDLQFREPWSKRKRSKRPRLETEEEYLALCLIMLAQGGNNTNTNTSSHRQTQQSESQKEPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTSASAVASDSVTASTVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNHHSNSNALTSSSDGVGGGAASSHTLRGFDLNLPAPLTEFWPPVGFDFRKKVGGGDEQEVESPLPINAAKKARLFSGDDDQTA* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2399 252 PANTHER ZINC FINGER PROTEIN ZAT10 1 243 - -
Vra8g2399 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Vra8g2399 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Vra8g2399 252 MobiDBLite consensus disorder prediction 62 89 - -
Vra8g2399 252 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Vra8g2399 252 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vra8g2399 252 MobiDBLite consensus disorder prediction 62 85 - -
Vra8g2399 252 MobiDBLite consensus disorder prediction 220 252 - -
Vra8g2399 252 MobiDBLite consensus disorder prediction 118 136 - -
Vra8g2399 252 SUPERFAMILY beta-beta-alpha zinc fingers 92 165 IPR036236 -
Vra8g2399 252 Pfam C2H2-type zinc finger 92 116 - -
Vra8g2399 252 Pfam C2H2-type zinc finger 143 167 - -
Vra8g2399 252 MobiDBLite consensus disorder prediction 108 137 - -
Vra8g2399 252 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 243 IPR044653 GO:0003700
Vra8g2399 252 Gene3D Classic Zinc Finger 89 165 - -
Vra8g2399 252 SMART c2h2final6 92 114 IPR013087 -
Vra8g2399 252 SMART c2h2final6 143 165 IPR013087 -
Vra8g2399 252 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2399 Vra-Chr8 42173855 42175040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2399 1 243 C2H2 Transcription Factor Family AT1G27730 44.141 3.43e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g2399 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2399 - - var:108325081 428.328