Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2397 ATGGCTTCTGCGGTGGCCGCCGCGGCGGGGCAAGAGTTGTCGAATCCTCCATCGGACGGAATAACGAATCTCCGATTCTCAAATCACAGCGATAATCTCTTGGTCTCCTCATGGGACAAGAGTGTGAGGTTGTACGAAGCGAGCGCCAATGTGTTGAGAGGAGAGTTCATGCACGCTGGCCCCGTTCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCCGACAACACTGTCAGACGGCTTTTCTTCAGCTCTAATAAAGAGGATATCCTAGGAAGGCATGATGCGCCTGTTCGTTGTGTTGAGTACTCCTATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGCTGGGACCCTAGAGGTACAAGTGGCCAAGAGCGCACACTCGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGAAATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAACAGAAAAGAGAATCTTCATTGAAATATCAAACTAGATGTGTGCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCAGTGGAAGGGCGTGTCTCGATGGAATTCTTTGACCTCTCAGAAGCTATCCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCCGAGGCCGGAAGGGACATTGTCTATCCCGTAAATGCAATTGCATACCACCCCATATATGGAACGTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACACGAAATATCCTACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACATTTGAAGAAGGACCTAAAAGCAACGAATCAGATGCTATTTTTGTCCGTAGCGTAAACGAGATTGAAGTGAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCAGCGTAA 1026 0.4815 MASAVAAAAGQELSNPPSDGITNLRFSNHSDNLLVSSWDKSVRLYEASANVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRLFFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGTSGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAIQAKKYAFKCHRKSEAGRDIVYPVNAIAYHPIYGTFATGGCDGYVNVWDGNNKKRLYQYTKYPTSIAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNPPA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2397 341 Pfam WD domain, G-beta repeat 19 45 IPR001680 GO:0005515
Vra8g2397 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Vra8g2397 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Vra8g2397 341 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515
Vra8g2397 341 Gene3D - 7 335 IPR015943 GO:0005515
Vra8g2397 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vra8g2397 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Vra8g2397 341 PANTHER MRNA EXPORT FACTOR AND BUB3 6 336 - -
Vra8g2397 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Vra8g2397 341 SMART WD40_4 228 270 IPR001680 GO:0005515
Vra8g2397 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Vra8g2397 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Vra8g2397 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Vra8g2397 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vra8g2397 341 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 6 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2397 Vra-Chr8 42160547 42163963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2397 74 279 Eukaryotic Initiation Factors Gene Family AT2G46280 27.230 1.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2397 K02180 - gmx:100808389 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2397 8 42160547 42163963 Vra8g2397 8 42160547 42163963 ECH