Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2395 ATGGAATCTTCTCAACAGATTTCTGAAGAATGGGGTTCTCTTTGTGGATTGCACACAACTGAAGAAGCTGACTTTATGGCTCAGTTGTTTCCTGGTACTTACTGTTCTGTCACAGAAAAGCACTATGGAAATACCACTTTTGGCTTTTGGCCTGCCCATGAATCCAAAACAGTGACCATGAAAGCCACTAATAACAACTCATACTTCCTTCCAAATGTTACAGACATTAATTTATGTTTCTCACAAGGGAGTAGCTCCAGCATTGACAGTGGTAATAGTATCTTTTCCACTACAAGTACTGGACCCTACTACTGTGATCCAGCAACAAACTTTGACTCAGTGTCCATGGCCTTTTTCCTGGGAGATGCCCAATTCAGTCCCCATAATTTTCACTGTTATGATAACTCAAGCCAACAGATAAATGAAAACACTGATGAAGAGTCAAGTCTAGACCCAGTAACTCTTGCCGACAACAATTTGCAGGCTAAGAGGGAGCATGAGATGATGGTTTCTGAATATGCACACGAGGACAGAAGTGAAAACCTGGAGAACCTAACAAAAAGGCTTAGGAACTCAAAAGAGGTCTCAAAAACATTGAGGAGTACCAAGTTGAAGAAAAATTCAAAATCTGCTTCAACGAACAAGAATGAAGATGACAGAAGCTTGAACCTCGAAGGGCTTGGCTGTTTTTCACAGGGTGACTCTAATGCTTCTCTGAAGCCAAATGGAGGAGCATTGAAAGATCCTGCACCTCCCAGTTTGCTTAGAAAATCAAGAGCAACTAAGGGTCCTGCTACTGATCCACAGAGCCTTTATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAGTCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGATGAAGCAGTGCAATACGTTAAATTTTTACAGCTCCAAATCAAGCTTCTGAGCTCTGATGATATGTGGATGTATGCCCCAATTGCTTACAATGGTATAAACATTGGGCTTGACCTCAGTATTTCTCCAACCAAAGGAAGATGA 1053 0.4122 MESSQQISEEWGSLCGLHTTEEADFMAQLFPGTYCSVTEKHYGNTTFGFWPAHESKTVTMKATNNNSYFLPNVTDINLCFSQGSSSSIDSGNSIFSTTSTGPYYCDPATNFDSVSMAFFLGDAQFSPHNFHCYDNSSQQINENTDEESSLDPVTLADNNLQAKREHEMMVSEYAHEDRSENLENLTKRLRNSKEVSKTLRSTKLKKNSKSASTNKNEDDRSLNLEGLGCFSQGDSNASLKPNGGALKDPAPPSLLRKSRATKGPATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLDEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGINIGLDLSISPTKGR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2395 350 Coils Coil 175 202 - -
Vra8g2395 350 Pfam Helix-loop-helix DNA-binding domain 274 314 IPR011598 GO:0046983
Vra8g2395 350 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 345 - -
Vra8g2395 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 330 IPR036638 GO:0046983
Vra8g2395 350 CDD bHLH_AtIND_like 265 327 - -
Vra8g2395 350 Gene3D - 268 322 IPR036638 GO:0046983
Vra8g2395 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Vra8g2395 350 SMART finulus 270 319 IPR011598 GO:0046983
Vra8g2395 350 MobiDBLite consensus disorder prediction 188 274 - -
Vra8g2395 350 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 8 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2395 Vra-Chr8 42140870 42142503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2395 10 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.772 1.39e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g2395 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2395 - - vun:114189633 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2395 8 42140870 42142503 Vra8g2395 8 42140870 42142503 ECH
Vra11g0030 11 254834 258011 Vra8g2395 8 42140870 42142503 PCT