Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2394 ATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTCAGTGGTTTTTGCACAGCTGAGGAAGCCGACTTCATGAGCCAGTTGCTTGACAACTGCTCACTCCCTGAAAATCTGTGTGGAAATTTCCACTTGGGAATTCCATCTGCGACATGGCCTGGCCATGAATCAACAATACTGACCGTGACAAGCATCAATGACAGTCCATATTTTCCTACAACCGCTGATAATAGTAATAGTAATTATTTATGTTTTTCACAAGGAAGTTGCTCCACTTCTGATAGTAGCAATATATTTCCTGCTACAAGTGGCAATAAACACTGCTTGAACGACCCAGTAGCCAACATTGGCTACGTGTCCATGGGTTTTGCCAAGTTCAGCCCATATAATGTACAAGGGAGTGACAGCCAACAGATGAATGGATACACTGATCAAGATTTAGGTCCAGAGGTTATTGCTGACAAGAACTCCCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAACAACAGAGGATATAACCACCAATCTGGAGAAGTCGGGAAAAAGATCTAGGGGCTCAATGCAGGTACGAAAGAGCAAGAAAAATGCTAAATCCGTGAAGAAACCAAAATCTGATTCTATAAGTAACTCTGAAGAGGGTAGAAGTCCTGATCTTCATGGTTGCTGCTCAGATGATGATGACTCTAATGCTTCTCAAGAGCTGAATGAAGGAGGATCTCCAAATCTGAGCCTGGAGGATTCTACATCCCTTAAGTTGAAGGGGAAAAAATCAACAGCTAGTAGAGGTTCTGCTACTGATCCACAAAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGATTGAAAATCCTACAAAACCTTGTCCCGAACGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCCGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTTTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAACAGCCATAA 1059 0.4202 MDPTEQISEEWSSLSGFCTAEEADFMSQLLDNCSLPENLCGNFHLGIPSATWPGHESTILTVTSINDSPYFPTTADNSNSNYLCFSQGSCSTSDSSNIFPATSGNKHCLNDPVANIGYVSMGFAKFSPYNVQGSDSQQMNGYTDQDLGPEVIADKNSQDHQECEVLVSEATTEDITTNLEKSGKRSRGSMQVRKSKKNAKSVKKPKSDSISNSEEGRSPDLHGCCSDDDDSNASQELNEGGSPNLSLEDSTSLKLKGKKSTASRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2394 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 348 - -
Vra8g2394 352 MobiDBLite consensus disorder prediction 230 270 - -
Vra8g2394 352 Pfam Helix-loop-helix DNA-binding domain 276 316 IPR011598 GO:0046983
Vra8g2394 352 Gene3D - 266 323 IPR036638 GO:0046983
Vra8g2394 352 PANTHER TRANSCRIPTION FACTOR BHLH54 8 348 - -
Vra8g2394 352 SMART finulus 272 321 IPR011598 GO:0046983
Vra8g2394 352 CDD bHLH_AtIND_like 267 329 - -
Vra8g2394 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 331 IPR036638 GO:0046983
Vra8g2394 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Vra8g2394 352 MobiDBLite consensus disorder prediction 174 278 - -
Vra8g2394 352 MobiDBLite consensus disorder prediction 202 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2394 Vra-Chr8 42135003 42137032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2394 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.753 1.61e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g2394 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2394 - - gmx:100817334 580.482