Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2388 ATGGCCAGCTTTGGAGGAACCACACAAAAATGCATGGCTTGTGACAAAACCGTCTACCTTGTTGATAAGCTAACTGCTGATGGCCGTGTCTATCACAAGGCCTGCTTCAGATGCCACCATTGCCGCAATACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGGGTCCTATATTGCAGACCTCATTATGATCAACTTTACAAGCGAACTGGCAGCTTGGACAAAAGCTTCGAAGGAACACCCAAAGTTCAGAAACCAGAGAAACCGATCACTGAAAATGAGAACTCTAAGGGCATAGCAAACGTGTTCTTGGGTACCAGAGACAAATGTGTGTGCTGCAAAAAGACAGTGTATCCCACTGAGAGGGTAACCGTTAATGGGACACCCTACCATAAAAGCTGCTTCAAATGTACCTATGGAGGTTGCACTATAAGCTCATCAAACTTCATCACACACGAGGGAAAGCTGTACTGCAAACACCATCACATTCAACTATTCAAAGAGAAGGGTAATTACAGTCAGCTTGAGAATGACCAAGTTGCTACCACGGAAGTCGCTGCTTGA 564 0.4521 MASFGGTTQKCMACDKTVYLVDKLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQKPEKPITENENSKGIANVFLGTRDKCVCCKKTVYPTERVTVNGTPYHKSCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVATTEVAA* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2388 187 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vra8g2388 187 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Vra8g2388 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Vra8g2388 187 Gene3D Cysteine Rich Protein 105 174 - -
Vra8g2388 187 Gene3D Cysteine Rich Protein 6 75 - -
Vra8g2388 187 CDD LIM1_SF3 7 69 - -
Vra8g2388 187 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vra8g2388 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Vra8g2388 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Vra8g2388 187 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Vra8g2388 187 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 183 - -
Vra8g2388 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Vra8g2388 187 SMART lim_4 109 161 IPR001781 -
Vra8g2388 187 SMART lim_4 10 62 IPR001781 -
Vra8g2388 187 Pfam LIM domain 11 65 IPR001781 -
Vra8g2388 187 Pfam LIM domain 110 165 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2388 Vra-Chr8 42056147 42057555 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vra8g2388 LIM 3.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2388 K09377 - gmx:100306027 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2388 8 42056147 42057555 Vra8g2388 8 42056147 42057555 ECH