Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2372 ATGTCTTCGGATACAAAGAAAAGCCGTGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTCACCTTCTCCAAACGCCGTACCGGCCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGCTGCTGACGTTGCACTCGTTGTGTTCTCCCCCGGAGAGAAGGTCTTCTCCTTCGGTCACCCCAACGTCGACGCCGTCATTGACCGCTACCTCGCGCGGGCCCCGCCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCAGCGCATGGCCAACGTGCGTGACCTCAACGCGCAGCTCACTCAGATCAACGCCCAATTGGAGGAAGGGAGGCAACACGGGGAGGAGCTGAATCGCATTACGAAGGAATCACAGGCCCAGCTATGGTGGGCCCAGCCCATAGAGAAAATGAGCCTGGCCCAGATGGAGCAGTACAAGGCGGCGTTGGAGGAGCTGAAGAAACTGGTTGCGCATCTTGCTGACAGGGCCATGCTTGAGACTGCAACAAATCAGGGTCGTCAGTTTTTTCCCGGGGCTCCTTCCTCTTCCAATCTGCTGCATTACCCACACCCTTCTCCGGTGTTCCCCCAACCGCTGATTCAGCCACCCATGCTTCAGAACTTCATGCTTCCTGATGGGAGCATCGTAGGCCACCAAGGATTTAATCACATGGAAATGGGAGGATATGCACCTGGACCAGGACCCTCTGGGGGGAATATGTGGCGAGCAAAAAGTAAAGCCTCAATCTGCTAG 774 0.5581 MSSDTKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVIDRYLARAPPQDMGTMQFIEAQRMANVRDLNAQLTQINAQLEEGRQHGEELNRITKESQAQLWWAQPIEKMSLAQMEQYKAALEELKKLVAHLADRAMLETATNQGRQFFPGAPSSSNLLHYPHPSPVFPQPLIQPPMLQNFMLPDGSIVGHQGFNHMEMGGYAPGPGPSGGNMWRAKSKASIC* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2372 257 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Vra8g2372 257 PANTHER MADS BOX PROTEIN 8 184 - -
Vra8g2372 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vra8g2372 257 MobiDBLite consensus disorder prediction 1 18 - -
Vra8g2372 257 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Vra8g2372 257 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Vra8g2372 257 Coils Coil 100 120 - -
Vra8g2372 257 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Vra8g2372 257 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 184 - -
Vra8g2372 257 Gene3D - 89 182 - -
Vra8g2372 257 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g2372 257 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vra8g2372 257 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vra8g2372 257 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vra8g2372 257 Coils Coil 149 169 - -
Vra8g2372 257 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2372 Vra-Chr8 41918652 41920262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2372 5 190 Type I MADS-box Gene Family AT5G60440 53.968 7.80e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra8g2372 SRF-TF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2372 - - gmx:100794751 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2372 8 41918652 41920262 Vra8g2372 8 41918652 41920262 ECH