Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2371 ATGGCCATGGATTCAGGAGCAAAGAAAAGCCGTGGTCGCCAAAAGATCGAGATGAAGAAAATGAGCAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGAAGCGGCCTTTTCAAGAAGGCCAGTGAGCTCTGCACCCTCTGCGGAGCCCATGTGGCGCTGGTGGTGTTCTCGCCGGGAGAGAAGGTGTTCTCCTTCGGCCACCCCAACGTGGACGCTGTCATCGACCGCTTTCTGGGGCGGGCACCGGTGCAGGACTCCGGCACCATGCAGTTCATCGATGCCCACCGCATCTCCAACGTGCGTGACCTGAACAAGCAGCTGACTCAGGTGAACGAACTTTTGGAAACGGAGAGGAAGCGCGGGGAGGAGCTGAGCCGGCTGAGGAAGGAGGCGCAGGAGCTGATGTGGTGGACCCGCCCCACTGAGGAGCTGAGTGTGGAGCAGATGGAGCAGTACAAGACAGCATTGGAGGAGCTGAAGAAGCACGTTGCCCAACTTGCTGAGAGGGCTATGCTTCAGAGTGCTGTGAACCAGGGTCATCAGTTTTTCCCAGGGGCTTCTTCCTCTGCAAATTTCGTGCCTCAGCATCAACCACAGCATCAGCTTCAGCCACAGCCTCCTCAGGTGTTCACTGCTCAGACCATCCCTACCATGCTTCAGAGCTATATGTTCCCTGATGTAACCATCATGCAGCAGCAGCATCACGGGTTCGATAACATGGGGATGGGAGGATATGGACCTGGACCTGCTCCTGCTGGAGGTTTTTTCTGA 777 0.565 MAMDSGAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDAVIDRFLGRAPVQDSGTMQFIDAHRISNVRDLNKQLTQVNELLETERKRGEELSRLRKEAQELMWWTRPTEELSVEQMEQYKTALEELKKHVAQLAERAMLQSAVNQGHQFFPGASSSANFVPQHQPQHQLQPQPPQVFTAQTIPTMLQSYMFPDVTIMQQQHHGFDNMGMGGYGPGPAPAGGFF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2371 258 CDD MADS_MEF2_like 12 80 IPR033896 GO:0000977|GO:0045944
Vra8g2371 258 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vra8g2371 258 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vra8g2371 258 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vra8g2371 258 PANTHER MADS BOX PROTEIN 10 204 - -
Vra8g2371 258 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vra8g2371 258 Gene3D - 23 90 IPR036879 GO:0003677|GO:0046983
Vra8g2371 258 SUPERFAMILY SRF-like 12 85 IPR036879 GO:0003677|GO:0046983
Vra8g2371 258 Coils Coil 151 171 - -
Vra8g2371 258 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g2371 258 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 204 - -
Vra8g2371 258 Coils Coil 99 136 - -
Vra8g2371 258 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vra8g2371 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Vra8g2371 258 Gene3D - 91 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2371 Vra-Chr8 41902915 41903844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2371 7 191 Type I MADS-box Gene Family AT5G60440 57.979 3.93e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra8g2371 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2371 - - pvu:PHAVU_007G047900g 449.129