Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2370 ATGTCGAAGAATAAAAAGTGTAGCTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCGAAGAAGAGTCATTTGCAAGTGACGTTCTCTAAACGTCGTTCAGGAGTGTTCAAGAAAGCCAGCGAACTTTGCACCCTCTGTGGTGTAGAGATCGCCATCGTCGTTTTCTCTCCTGCAGACAAGGCCTTCTCTTTTGGGCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCACGCGGAACCCTCCACAAGATTCCAGTGCGCAGCATCTCGTTGAGGCTCATCGAAACGCCAATGTTCGTGATCTCAACATGCAACTCACTCAGCTTTTTAACCTTTTGGAGGTTGAAAAGAAGCGAGGGGATGATCTGGACCATATGAGGAAAGCTAGGCAGAAACAGTTTTGGTGGGAGAGCCCTGTCGATGACCTTGGATTGCATGAGCTCCTCCAGTTAAAGGCCTCCACTGAGGACCTCAAGAACAACATAGAAAAACATGCCAGCAAATTCATCGTTGACCGCTCTTCTGCTCTATCTTCTTCCTCCATTATAGCACCTAGTAATGGATTTGCTGCAATCGAACGCTATGACGCCTTTGATAACAAACCTGATGTTGGGATTCCCATGGCTTCATCACCTCCCGATGCTCATTATCTTGCTTTTCGAAATTGGTATCTTTGA 681 0.4655 MSKNKKCSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQDSSAQHLVEAHRNANVRDLNMQLTQLFNLLEVEKKRGDDLDHMRKARQKQFWWESPVDDLGLHELLQLKASTEDLKNNIEKHASKFIVDRSSALSSSSIIAPSNGFAAIERYDAFDNKPDVGIPMASSPPDAHYLAFRNWYL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2370 226 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677|GO:0046983
Vra8g2370 226 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Vra8g2370 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vra8g2370 226 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Vra8g2370 226 PANTHER MADS BOX PROTEIN 8 180 - -
Vra8g2370 226 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Vra8g2370 226 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vra8g2370 226 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vra8g2370 226 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vra8g2370 226 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 180 - -
Vra8g2370 226 Coils Coil 149 169 - -
Vra8g2370 226 Gene3D - 90 179 - -
Vra8g2370 226 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2370 Vra-Chr8 41887622 41888540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2370 6 171 Type I MADS-box Gene Family AT5G60440 53.254 5.72e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra8g2370 SRF-TF 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2370 - - gmx:100793705 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0051 11 398022 398844 Vra8g2370 8 41887622 41888540 PCT