Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2366 ATGTCTCAGCTTTCGCCAAGGCTACTTTACTTTCTCTTTTGTCTTCTGATAACAAATTCTATATCTCAAGTTATAGCAGCCAACACTACACAAAACTTCCACTACTTCTGTGATCATGATAACGATAGAGGAGACTACACGGCCAACAGCACCTACCACACCAACCTCAACACCCTTTTGTCCACTCTCATTTCCAATACAGAAATCCATTACGGTTTCTACAATTTCTCAAATGGCGAAAACACTGATAAAGTGTACGCCATTGGGCTGTGTAGAGGAGATGTTCAGCCAGAGAACTGCCGCACATGCCTCAACGGTTCCAGGACCAATCTCACTGAACTTTGTCCAAACCGAAAGGAAGCAATTGGTTGGTACGAGGATGAGCAGTGTATGTTGCGCTACTCAGACCGCAATATATTCGGCCTTATGGAAATTGGACCTGCTTTTTATGCTAACAACGACAGGAATGCATCGGATTTGGATGAGTTCAATGAAGATGTCAACACCTTGCTACGTAACCTAAGTCGAATAGCTGCATCAGGTGACTCTCGTGTTAAGTATGCTGCAGATGGTATATCATCAGGTTCAAAGGTCATATATGGTCTAGTTCAGTGCACACCGGACTTGGAAGAGTCAGAGTGTGCTGATTGCTTGTCTCAGTCCATTGAACGTATCCCAATAGATTGTTGTAAAGACAAGATAGGTGGCAGGGTTGTTAGACCAAGTTGTAATATGCGGTTCGAAACCTCCTTTAAGTTCTATGGAGATCCAGCATTTGTACCACCAGCTCCTCCTCCTTCCACCACCGGAAAGAGCAACGCAACTATCATAATAATAGCAGTAGCAGTAGCAGTTGTTGTAATTGTTTTCGCGGTGCTTATTTTTATCTACATTCGTTTAACAGCGAGGAAGCCACGGAAAAGGTTTGAAACTCAACAAGAAGAACTAGATGATGATGATGATGGTGATGATGGAATTGATGCTTCTGAGCCATTGCAAATCAGATTTAACATCATACGAGATGCTACAAATGACTTTTCTGATTCTAATAAACTCGGACAGGGTGGATTTGGAGCTGTTTACAGGGGTACGCTACCCAATGGACAAGAGATTGCCGTCAAAAGGTTGTCAGCTAATTCTAGACAAGGAGATGCAGAGTTCAAGAATGAGGTGCTTTTAGTGGCCAAACTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTATGGAAGGAAGAGAAAAGCTACTTGTCTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTCATATTTGATGAAACCAAGAGAGCACAATTAGATTGGGATAGGCGCTTCAAAATCATTGCAGGTACTGCTCGAGGTATTCTCTACCTCCATCAAGATTCTCGATTGCGCATTATCCATCGTGATCTCAAAGCTGGTAACATTCTCTTAGACGAAGAGATGAACCCTAAGATAGCAGATTTTGGCTTGGCAAGGTTATTTGTCGTGGACCAAACGCATGAAGAGACACAGAGAGTTGTTGGGACATATGGATATATGGCACCTGAGTATGCATTGCATGGACAGTTTTCAGAGAAGTCAGATGTTTTTAGTTTTGGTGTATTGATTCTTGAGATTGTAAGTGGCCAGAAAATCAGTAGCATTCAACATGGAGAGGAAACGGGAGATCTACGCGATATTGCATGGCGAAGTTGGAAGGAAGGAAGAGCAAGAAATATTGTAGATCCTACGTTAAACAATGGTTCAGAAAGTGAAATAATGAGATGCGTCCATATTGGGTTACTGTGTGTACAAGACAATGCAGCTGCGAGACCCACCATGGCTTCCGTTGTAGCCATGCTGAATAGTCATTCTTTCAGTCTGCAAGTACCTGTGGCACCTGCACTTTATGGGAATGCCATGTCTGGAATCTTTGCAGACATGCAGATATGGGAGATTAATTCAGGGACGACAAGATCAAGAGAATCCACCAATAGATCAGACCAAGATTCCATCAATGAGGCTTCAATTACTGACCCATATCCTCGCTAG 2037 0.4246 MSQLSPRLLYFLFCLLITNSISQVIAANTTQNFHYFCDHDNDRGDYTANSTYHTNLNTLLSTLISNTEIHYGFYNFSNGENTDKVYAIGLCRGDVQPENCRTCLNGSRTNLTELCPNRKEAIGWYEDEQCMLRYSDRNIFGLMEIGPAFYANNDRNASDLDEFNEDVNTLLRNLSRIAASGDSRVKYAADGISSGSKVIYGLVQCTPDLEESECADCLSQSIERIPIDCCKDKIGGRVVRPSCNMRFETSFKFYGDPAFVPPAPPPSTTGKSNATIIIIAVAVAVVVIVFAVLIFIYIRLTARKPRKRFETQQEELDDDDDGDDGIDASEPLQIRFNIIRDATNDFSDSNKLGQGGFGAVYRGTLPNGQEIAVKRLSANSRQGDAEFKNEVLLVAKLQHRNLVRLLGFCMEGREKLLVYEFVPNKSLDYFIFDETKRAQLDWDRRFKIIAGTARGILYLHQDSRLRIIHRDLKAGNILLDEEMNPKIADFGLARLFVVDQTHEETQRVVGTYGYMAPEYALHGQFSEKSDVFSFGVLILEIVSGQKISSIQHGEETGDLRDIAWRSWKEGRARNIVDPTLNNGSESEIMRCVHIGLLCVQDNAAARPTMASVVAMLNSHSFSLQVPVAPALYGNAMSGIFADMQIWEINSGTTRSRESTNRSDQDSINEASITDPYPR* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2366 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 661 - -
Vra8g2366 678 Gene3D - 32 138 IPR038408 -
Vra8g2366 678 Gene3D - 148 251 IPR038408 -
Vra8g2366 678 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2366 678 Gene3D Phosphorylase Kinase; domain 1 311 421 - -
Vra8g2366 678 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Vra8g2366 678 Pfam Protein tyrosine and serine/threonine kinase 349 614 IPR001245 GO:0004672|GO:0006468
Vra8g2366 678 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2366 678 CDD STKc_IRAK 352 617 - -
Vra8g2366 678 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Vra8g2366 678 Pfam Salt stress response/antifungal 155 249 IPR002902 -
Vra8g2366 678 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vra8g2366 678 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 12 661 - -
Vra8g2366 678 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Vra8g2366 678 Gene3D Transferase(Phosphotransferase) domain 1 422 625 - -
Vra8g2366 678 MobiDBLite consensus disorder prediction 652 678 - -
Vra8g2366 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vra8g2366 678 SUPERFAMILY Protein kinase-like (PK-like) 331 616 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2366 Vra-Chr8 41865184 41869291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2366 7 631 Receptor kinase-like Gene Family AT4G21410 48.103 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2366 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2366 - - var:108324787 1236.86