Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2364 ATGGCTCAGCCAAGGCTACTTTACTTTCTCTTTTGTCTTCTGATAACAAATTCTATATCTCAAGTTATAGCAGCCAACACTACACAAAACTTCCACTACTTCTGTGATCATGATAACGATAGAGGAGACTACACGGCCAACAGCACCTACCACACCAACCTCAACACCCTTTTGTCCACTCTCATTTCCAATACAGAAACCCATTACGGTTTCTACAATTTCTCAAATGGCGAAAACACTGATAAAGTGTACGCCATTGGGCTGTGTAGAGGAGATGTTCAGCCAGAGAACTGCCGCACATGCCTCAACGGTTCCAGGACCAATCTCACTGAACTTTGTCCAAACCGAAAGGAAGCAATTGGTTGGTACGAGGATGAGCAGTGTATGTTGCGCTACTCAGACCGCAATATATTCGGCCTTATGGAAATTGGACCAGCTTTTTATGCTAACAACGACAGGAATGCATCGGATTTGGATGAGTTCAATGAGGATGTCAACACCTTGCTACGCAACCTAAGCCGCATAGCTGCATCAGGTGACTCTCGTGTTAAGTATGCCGCAGATGATAAACTATCAGGTTCTAAGGTCATATATGGTCTAGTTCAGTGCACACCGGACTTGGAAGAGTCAGAGTGCGCTAATTGCTTGTACCAGTCCATTGAACGTATCCCAATAGATTGTTGTAAAGACAAGATAGGTGGTAGGGTTGTTAGACCAAGTTGTAATATGAGGTTCGAAACATCCTTTAAGTTCTATGGAGATCCAGCATTTGTACCACCAGTTCCTACGGGAAAGAGAAACGCAATTATCATAGCAGTATCAGTTGTTGTAATTGTTTCCGCGGTGCTTACTTATATGTACATTCGTTTAAACGGGAGGAATTCATGGACAAATTTGGAAACTCTACAAGAAAACCTATATGATGATGATAATGATGGAATTGACGCTTCTGAGTCATTGCAAATCAGATTTAACATCATACGAGATGCTACAAATGACTTTTCTAATTCTAATAAACTCGGACAGGGTGGATTTGGGGCTGTTTACAGGGGTAAGCTACCCAATGGACAAGAGGTTGCCGTCAAAAGGTTGTCAGCTACTTCTAGACAAGGCGATGCCGAATTCAAGAATGAGGTGCTTTTAGTGGCCAAACTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTATGGAAGGAACAGAAAAGCTACTTGTCTACGAATTTGTTCCAAATAAAAGCCTTGATTACTTCATATTTGATGAAACCAAGAGAGCACAATTAGATTGGGATAGGCGCTTCAAAATCATTGCAGGTACTGCTCGAGGTATTCTCTACCTCCATCAAGATTCTCGATTGCGCATTATCCATCGTGACCTCAAAGCTGGTAACATTCTCTTGGACGAAGAGATGAACCCTAAGATAGCAGATTTTGGCGTGGCAAGGTTATTTGTTGTGGACCAAACTCATGAAGATACACAGAGAGTTATTGGGACATTTGGATATATGGCACCTGAGTATGCAGTGTTTGGAAAAATTTCAGAGAAGTCAGATGTTTTTAGCTTTGGTGTATTGATGCTTGAGATTGTAAGTGGTAAGAAAATCACTAGCATTCAACAAGGAGAGGAAACGGGATATCTATGCCATATTGTAAGTCGGAATGTTGTTCCGTTTATGTTGTTTGGAGTTGGGAAGTATGAAATTTGA 1707 0.4148 MAQPRLLYFLFCLLITNSISQVIAANTTQNFHYFCDHDNDRGDYTANSTYHTNLNTLLSTLISNTETHYGFYNFSNGENTDKVYAIGLCRGDVQPENCRTCLNGSRTNLTELCPNRKEAIGWYEDEQCMLRYSDRNIFGLMEIGPAFYANNDRNASDLDEFNEDVNTLLRNLSRIAASGDSRVKYAADDKLSGSKVIYGLVQCTPDLEESECANCLYQSIERIPIDCCKDKIGGRVVRPSCNMRFETSFKFYGDPAFVPPVPTGKRNAIIIAVSVVVIVSAVLTYMYIRLNGRNSWTNLETLQENLYDDDNDGIDASESLQIRFNIIRDATNDFSNSNKLGQGGFGAVYRGKLPNGQEVAVKRLSATSRQGDAEFKNEVLLVAKLQHRNLVRLLGFCMEGTEKLLVYEFVPNKSLDYFIFDETKRAQLDWDRRFKIIAGTARGILYLHQDSRLRIIHRDLKAGNILLDEEMNPKIADFGVARLFVVDQTHEDTQRVIGTFGYMAPEYAVFGKISEKSDVFSFGVLMLEIVSGKKITSIQQGEETGYLCHIVSRNVVPFMLFGVGKYEI* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2364 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vra8g2364 568 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Vra8g2364 568 CDD STKc_IRAK 340 546 - -
Vra8g2364 568 Pfam Protein tyrosine and serine/threonine kinase 337 534 IPR001245 GO:0004672|GO:0006468
Vra8g2364 568 ProSiteProfiles Protein kinase domain profile. 334 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2364 568 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vra8g2364 568 Gene3D Transferase(Phosphotransferase) domain 1 410 559 - -
Vra8g2364 568 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 11 554 - -
Vra8g2364 568 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Vra8g2364 568 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 554 - -
Vra8g2364 568 SUPERFAMILY Protein kinase-like (PK-like) 319 550 IPR011009 -
Vra8g2364 568 Gene3D - 30 136 IPR038408 -
Vra8g2364 568 Gene3D - 146 249 IPR038408 -
Vra8g2364 568 Pfam Salt stress response/antifungal 35 134 IPR002902 -
Vra8g2364 568 Pfam Salt stress response/antifungal 153 247 IPR002902 -
Vra8g2364 568 SMART serkin_6 334 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2364 568 Gene3D Phosphorylase Kinase; domain 1 300 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2364 Vra-Chr8 41846686 41850431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2364 9 551 Receptor kinase-like Gene Family AT4G05200 46.422 1.05e-161 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2364 PK_Tyr_Ser-Thr 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2364 - - vra:106770677 1116.29