Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2363 ATGGCTGCAATTTTCTGTTTGCTTGGTCTCTGGGCCACCATAATCGTATCGCATGCAAGCGCTCAGACATCCTGTGATAACAACAAAGGCAACTACACAGTCAACAGCACTTATTACAGCAACCTCAACACCCTCCTATCCAGTTTCTCTACCCAGGCCCAAGTGAACTACGGTTTCTACAATTTCTCACATGGCCAAGGCCTAGACAAAGCATACGCCATTGGGATCTGCAGAGGGGACCTTACACCGGAAGAATGTCTCAAATGCCTCAACGAAAACGGAGCGGCTCTCAGAAAAAACTGTCCAAACCAGAAAGAGGCAATTGTGTGGGATGGTGAATGCTCCTTGCGCTACTCTAACCGCTCCATATTTGGCCTCATGGATAATCAACCTACGGTGTTACTCTATTACACGTTGGAGGTAAGGGGTTCGATTGAGCAATTCAACGCATCACTTGAAAGCTTGATGAGGAATCTAACACGAACAGCTGCGTCTGGTGACTCTCGTCGTAAGTATGCTACAGGCAGTGCACCTGCTCCAGATTTTCAAACCATATACGGTTACACGCAGTGCTCGCCTGATTTGTCTTCGGAAGATTGCTCTAAGTGTTTGGATGAAGCTATTTCAAAAATCCCAGATTGCTGTAAGGGCAAGGCTGGAGGCAATGTTTTGAAACCCAGTTGTAGAATTAGATTTGACCCTTATATCTTCTATGGACCTACACTCAAGTTAGACCCAGATGCACCACCAACCACCCCACCGCCCTCTCGCTTACCCAACAGCACTTCTATACATTCTCAAGGAAAGAGCAACACGTCACGAACCGTCATCGCTGTAGCAGTGCCAGTTGCTGGTGTTGTTTTAGCGCTCAGTCTTTTTTGCATATATCTGATAGTTAGGAAGCCAAGAAAACAAATAGAAATTGGAAAAGAAGAGGATAGTGACGATGAAGATGAAGTTACATTTACCGAGTCATTGCAATTCAACTTTGAAACCATCCGAGTTGCCACAAATGAATTTGCTGATTCTAATAAGCTTGGACAGGGCGGGTTTGGAGCTGTATACAAAGGTCAGCTTTCCAATGGACAAGGAATTGCTGTCAAAAGGTTGTCAAGTAATTCTGGGCAAGGAGATACGGAGTTCAAGAATGAAGTGCTTTTATTGGCCAAACTTCAACACCGAAATATAGTCAGGCTGATTGGTTTCTGTTTGGAAGGAAGAGAAAGGCTGCTTATCTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGATCCAATAAAGAAAACACAGTTGGATTGGCAAATGCGCTACCAAATAATTAGAGGTATTACAAGAGGCATTCTCTATCTCCATGAGGATTCTCAACTACGAATTATACATCGAGATCTAAAAGCAAGCAACATTCTCTTGGACGAAAACATGTATCCTAAGATATCAGATTTTGGGATGGCAAGATTGTTTCAGGTGGATCAGACTCAAGCAAATACACACAGAGTTGTTGGAACCTATGGATATATGGCTCCTGAGTATGCAGTATATGGTCATTTTTCAGCAAAATCAGATGTTTTTAGTTATGGTGTAATGGTTCTTGAGATTGTAAGTGGGCGAAAAAGCATTGGTGCTCGTCATGGGGAGACAGTGGAGGATCTATTGAGTTTTACATGGCAAAACTGGAAGAATGGAACAATTACAAATATTGTAGACCCCACATTAATGAAGGGTTCTCGAAATGAAATGATAAGATGTATCCACATTGGGTTACTATGTGTTCAGGAAGATATGGCCATCAGACCAACCATGGCTTCTGTAGTACTCATGCTTAATAGTTATTCTATCACTCTCCCAGTACCTTCAGAACCTGCATTTGTTGTGAATAGTAGCACAAGAAGCTTTCCAAACATGTTGTCGGGAGAACATAATTCAGAGAAAACAGGATCGACTGAATCCACAAATAAACCAGCTCAATCTTCGGTAAATGAGGTTTCAATTACTGAGTTATACCCTCGCTAG 2019 0.4225 MAAIFCLLGLWATIIVSHASAQTSCDNNKGNYTVNSTYYSNLNTLLSSFSTQAQVNYGFYNFSHGQGLDKAYAIGICRGDLTPEECLKCLNENGAALRKNCPNQKEAIVWDGECSLRYSNRSIFGLMDNQPTVLLYYTLEVRGSIEQFNASLESLMRNLTRTAASGDSRRKYATGSAPAPDFQTIYGYTQCSPDLSSEDCSKCLDEAISKIPDCCKGKAGGNVLKPSCRIRFDPYIFYGPTLKLDPDAPPTTPPPSRLPNSTSIHSQGKSNTSRTVIAVAVPVAGVVLALSLFCIYLIVRKPRKQIEIGKEEDSDDEDEVTFTESLQFNFETIRVATNEFADSNKLGQGGFGAVYKGQLSNGQGIAVKRLSSNSGQGDTEFKNEVLLLAKLQHRNIVRLIGFCLEGRERLLIYEFVPNKSLDYFIFDPIKKTQLDWQMRYQIIRGITRGILYLHEDSQLRIIHRDLKASNILLDENMYPKISDFGMARLFQVDQTQANTHRVVGTYGYMAPEYAVYGHFSAKSDVFSYGVMVLEIVSGRKSIGARHGETVEDLLSFTWQNWKNGTITNIVDPTLMKGSRNEMIRCIHIGLLCVQEDMAIRPTMASVVLMLNSYSITLPVPSEPAFVVNSSTRSFPNMLSGEHNSEKTGSTESTNKPAQSSVNEVSITELYPR* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2363 672 Pfam Salt stress response/antifungal 25 120 IPR002902 -
Vra8g2363 672 Pfam Salt stress response/antifungal 146 233 IPR002902 -
Vra8g2363 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vra8g2363 672 Gene3D Transferase(Phosphotransferase) domain 1 416 617 - -
Vra8g2363 672 Pfam Protein kinase domain 341 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2363 672 ProSiteProfiles Gnk2-homologous domain profile. 20 123 IPR002902 -
Vra8g2363 672 Gene3D Phosphorylase Kinase; domain 1 303 415 - -
Vra8g2363 672 SUPERFAMILY Protein kinase-like (PK-like) 325 638 IPR011009 -
Vra8g2363 672 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 6 653 - -
Vra8g2363 672 MobiDBLite consensus disorder prediction 636 666 - -
Vra8g2363 672 MobiDBLite consensus disorder prediction 244 269 - -
Vra8g2363 672 SMART serkin_6 340 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2363 672 ProSiteProfiles Gnk2-homologous domain profile. 129 237 IPR002902 -
Vra8g2363 672 MobiDBLite consensus disorder prediction 636 672 - -
Vra8g2363 672 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 653 - -
Vra8g2363 672 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vra8g2363 672 Gene3D - 137 237 IPR038408 -
Vra8g2363 672 Gene3D - 19 122 IPR038408 -
Vra8g2363 672 CDD STKc_IRAK 346 611 - -
Vra8g2363 672 ProSiteProfiles Protein kinase domain profile. 340 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2363 Vra-Chr8 41834253 41838143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2363 28 672 Receptor kinase-like Gene Family AT4G21410 48.323 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2363 Pkinase 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2363 - - gmx:100791582 957.592